Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq44 223 3e-53 seq616 141 9e-29 seq36 118 1e-21 seq4 91.5 1e-13 seq116 89.7 5e-13 >seq44 Length=1464967 Score = 223 bits (246), Expect = 3e-53 Identities = 351/497 (71%), Gaps = 12/497 (2%) Strand=Plus/Minus Query 19020 GGGTTAGCGCCATTGCCGCCTGGAAACTCCCAATCAATATCGACGCCATCGAAGAATTTC 19079 |||||||| || || || || || ||||||||||||||||| |||||||||||||||||| Sbjct 1426893 GGGTTAGCTCCCTTACCTCCAGGGAACTCCCAATCAATATCAACGCCATCGAAGAATTTC 1426834 Query 19080 CACGTTTCTAGATACTCTTGGACTGAATCGATAAAC--GTCTGCCGTACGATCTTGTCGT 19137 || || | || | | || | ||||||| | | || |||| | || | ||||| | Sbjct 1426833 CAGGTCTGTAAAAAGTCCTTGACTGAACCAACGAAGCGGTCTCTCTTA--ACTTTGTCAT 1426776 Query 19138 GCATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCACTTTTAGAT 19197 | | | || || || | || ||||| || |||| ||||| || | || || | Sbjct 1426775 CGAAGAAGAAGAAGGGATCAGCCAGGGTCCAACCACCGACTGAAGGAAGAATCTTCAGGT 1426716 Query 19198 GAGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCC 19257 ||| || ||| ||| ||| ||||| || || ||||| ||||| || || |||| Sbjct 1426715 CAGGTTTGGCCTGTTTCAACATCATCAGTTGACCGAAATTGCCCTTGTAAGGCTCATTCC 1426656 Query 19258 ATG-CGCTGACACCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCACT 19316 | | || | | |||| | || ||| || | || |||||||||||||| |||| ||| Sbjct 1426655 AGGACGATAAGCCCTTCTGTGGCTTT-TGCAAAGCAGCCCAAGGATCGTGGATGGATACT 1426597 Query 19317 TTGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGTT 19376 |||||||| | |||||| || || ||||||| |||| |||||| ||| || || Sbjct 1426596 TTGAAGTCTTCCCGACCGCTGCAGGAGCGTTGCAGTGCTTGGAAACTACCC---TCAATT 1426540 Query 19377 ---TTGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACAACAAA 19433 || | || || ||||| || || ||||| || || | ||| |||||||| || Sbjct 1426539 TCCTTCAAACTGTCGTTAATGCCATCACCGCCGCAAATCGGGATGAAGCCGTACAATAAG 1426480 Query 19434 TGCGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACACCCCAT 19493 || | || ||| || ||| ||||| || ||||| |||| |||||| ||||| |||||| Sbjct 1426479 TGGGTCAGGTTGGGAACGGGAACTTTGTCTACGGGGAACTTTCGCGGGTACACGCCCCAT 1426420 Query 19494 TCGACAAAGTATGCACC 19510 || || ||||| ||||| Sbjct 1426419 TCTACGAAGTACGCACC 1426403 >seq616 Length=113079 Score = 141 bits (156), Expect = 9e-29 Identities = 481/742 (65%), Gaps = 13/742 (2%) Strand=Plus/Plus Query 150722 TTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTGTGAAACGGT 150781 || |||||||||||||| || || | ||| |||||| | | | ||| | | ||| Sbjct 35481 TTAACAACTTGAAATTCACCTGATAGAACGCGTCTCTGATATATATTGGAGGTTATGGGT 35540 Query 150782 TCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACA 150841 ||||||||||| || ||| || ||||| || || | || || |||||| || || Sbjct 35541 TCAAATGACTCATTATTGCCAAGAATTTGAGCTGTAGATGCTGTGGGCATGGGAGCTACT 35600 Query 150842 AGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCCCAT 150901 | | ||| || | | || | |||| || ||| |||||| | ||||||||| Sbjct 35601 AAAAGTGAGTTTCTAAGGCCATGTTTTGCAATTTTTTCTTTCAAGGCAGTCCAGTCCCAC 35660 Query 150902 AACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCTA 150961 || ||| || | ||||||||| ||||||||| || ||||||| |||||| || Sbjct 35661 AAGTTAGTTGGAGTCTTATTCCACATATCGTATTGTAAAATTCCTTGGCTCGCCGGACTG 35720 Query 150962 CCGGCAAACGTGCTATAAGGCTCACTA-ACAGATGCCAGTTCGTAACTGGCCTCGAGCGC 151020 || || | || || || ||| || || | || | || || || || || Sbjct 35721 CCTTCATAAGTTTCAT-AGACTCCATATTTTTCGGCTAATTGACAGCTTGCTTCAAGTGC 35779 Query 151021 AGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCACGTA 151080 | | ||| | |||||| ||||||| ||| | | ||| | || || |||| Sbjct 35780 TCCGTAATAAATTGTTTCAAATATTTGTTGATTTAGCTTTATGGCCGGTTCACTATCGTA 35839 Query 151081 CGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGACG 151140 || || |||| | || ||||| || || || ||||| | ||||| || || || | Sbjct 35840 TGGAATACGCATAAGAATAAATGTGTCTGCTAATCCTTGCACTCCTATACCAATTGGTCT 35899 Query 151141 ATGGCGCATATTAGAtttttttGCAGTTTC---AATAGGGTAGAAATTGCGATCAATAAT 151197 || | |||||| ||| |||| || ||| || ||||| |||| |||||||| Sbjct 35900 GTGTCTCATATTGGATGTTTT---AGCTTCAGGAACTGGGTAATAATTAACTTCAATAAT 35956 Query 151198 TTTATTCAAACTATTCACTA-CATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAG 151256 |||||| | | | | || || |||| || | | | | ||||| | | Sbjct 35957 TTTATTAAGATTCTGTGTTATGATTTTTG-TAACTTCTTTTAGTTTATCAAAATTGTATG 36015 Query 151257 ---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTT 151313 |||| | ||||| | | | || | ||||| || || | ||| || || ||| | Sbjct 36016 TTTTATCTTCATTGACAAACATGTTAAGTGCAATAGAGGCCAAATTGCAAACAGCAACCT 36075 Query 151314 CGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGC 151373 | || | | || | |||||||| | ||||||||||||||| || || ||| Sbjct 36076 CATCAGCTGAAGTGTACTCCACTATTTCAGTACACAAATTGCTGCACTTAATAGTTCCTA 36135 Query 151374 AATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGG 151433 ||| |||| || |||||||||||||| | ||| || || ||||| || ||||| || | Sbjct 36136 GATTTTTTTGGTTACTTTTGCGGTTGCACGAGTCTTTATACAACATATATGGTGTTCCCG 36195 Query 151434 TTTCGGCTTGAATTTCTATAAT 151455 |||| |||| ||||||||| Sbjct 36196 TTTCTACTTGTGCTTCTATAAT 36217 >seq36 Length=1647457 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 |||||||| | |||||||| ||||| || ||||| ||| | || | ||| ||| Sbjct 935554 ACTAAATGCAAAGTAGATTCCTTTTGGATATTGTAGTCGGAGAGAGTACGGCCGTCCTCG 935613 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 || || ||||| ||| |||| || || |||||||| ||||| |||||||| ||||| | Sbjct 935614 AGCTGCTTACCGGCAAAGATAAGTCGCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGA 935673 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 ||||| || | | || | ||||| | || || ||||||| || | ||| || Sbjct 935674 ATTTTGGCCTTAACATTCTCAATTGTGTCAGAAGGCTCCACTTCAAGTGTGATCGTTTTA 935733 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||||| || || ||||||||||||||| Sbjct 935734 CCGGTCAGCGTCTTAACGAATATTTGCATA 935763 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 |||||||| | || || ||||| || ||||||||||| || |||| ||| || Sbjct 937309 ACTAAATGCAGAGTGGACTCTTTCTGAATGTTGTAATCTGACAGAGTGCGGCCGTCCTCA 937368 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 || ||||| || ||| |||| || || |||||||| ||||| |||||||| || || Sbjct 937369 AGCTGTTTTCCGGCAAAGATAAGTCGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGG 937428 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 ||||| ||| | | || | ||||| | ||||| ||||| | || | || ||| Sbjct 937429 ATTTTAGCTTTAACATTCTCAATTGTGTCCGATGGTTCCACTTCCAGTGTGATTGTTTTG 937488 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCATA 137412 || |||| || || || || ||||||||| Sbjct 937489 CCAGTCAGCGTCTTGACAAAAATTTGCATA 937518 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || || |||| ||| ||||| || || |||||||| || | |||| | ||||| Sbjct 937537 ACCAAGTGAAGTGTGGATTCCTTCTGAATGTTGTAGTCTGATAGAGTGCGCCCATCTTCT 937596 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | || || || ||| | || ||||| |||||||| ||||| |||||||||||||| Sbjct 937597 AACTGCTTTCCGGCAAAAATGAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTGG 937656 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 ||||| || | | ||| | ||||||| || || ||||| | ||| | || || Sbjct 937657 ATTTTGGCCTTCACATTTTCAATAGTGTCTGAAGGCTCAACTTCCAAAGTGATAGTTTTC 937716 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || || || |||||||| || ||||| Sbjct 937717 CCAGTTAAAGTCTTTACGAAGATCTGCAT 937745 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| || || || || || ||||| ||||| | |||| |||||| | ||| Sbjct 455120 TGAAGAGTTGACTCCTTCTGGATGTTATAATCTGAGAGGGTGCGGCCGTCTTCTAATTGC 455061 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || |||||| ||||||| || |||||||| || || || ||||| || || |||||| Sbjct 455060 TTTCCAGCAAAGATCAGTCGCTGCTGATCTGGGGGAATACCTTCCTTATCTTGAATTTTA 455001 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 ||| | | || | ||||||| || || ||||| | ||| | || || || ||| Sbjct 455000 GCTTTGACGTTCTCAATAGTGTCTGACGGCTCAACTTCGAGAGTGATGGTTTTACCAGTC 454941 Query 137389 AATGTTTTTACGAATATTTGCATAGCTTAT 137418 || ||||||||||| || ||||| ||||| Sbjct 454940 AAGGTTTTTACGAAAATCTGCAT--CTTAT 454913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| ||||| || || || |||||||| ||| | |||| || ||||| ||| Sbjct 456257 TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGT 456198 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 || ||||| |||||| || ||||| || || || |||||||||||||| || ||| Sbjct 456197 TTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGGATCTTT 456138 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 |||| | || | ||||| | || || ||||||| ||| | || ||||| || Sbjct 456137 GCCTTTACATTCTCAATGGTGTCAGAAGGCTCAACTTCAAGAGTAATAGTTTTGCCAGTA 456078 Query 137389 AATGTTTTTACGAATATTTGCATA 137412 | || || || || || |||||| Sbjct 456077 AGGGTCTTGACAAAGATCTGCATA 456054 >seq4 Length=2913607 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/143 (75%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 54800 GCTTCAATGTTGCCCAAATCACCGACGTGTCTCACCGCAGCGTTGGGCGCACCATGAT-- 54857 || ||||||||||| | |||||||||||| | ||| | |||| ||| |||| || | Sbjct 2347997 GCCTCAATGTTGCCGAGATCACCGACGTGACGCACGGACGCGTCGGGGCCACCGTGCTCC 2347938 Query 54858 TGCTACCCGTCGGATTAAAATGTTCTCCGGCCGAAGTACAGCCGTTGCTGATGTCGCCAA 54917 |||| | ||| ||||| || | |||||||| || |||||||| || |||| || | Sbjct 2347937 TGCT--TCAGCGGGTTAAAGTGCGCGCCGGCCGATGTGCAGCCGTTTGTGTTGTCACCGA 2347880 Query 54918 ATTCGTGTACGTGAAAACCGTGC 54940 | || || ||||| ||||||||| Sbjct 2347879 ACTCATGCACGTGGAAACCGTGC 2347857 >seq116 Length=882076 Score = 89.7 bits (98), Expect = 5e-13 Identities = 101/134 (75%), Gaps = 6/134 (4%) Strand=Plus/Plus Query 123616 GCAGGATTTTTCTACACGGGACAAAGCGACAAAGTTAAATGTTTCGCCTGCGACGGAGGC 123675 ||||||||||||||||| || ||| | || ||| ||||||||| ||||| ||||| Sbjct 457935 GCAGGATTTTTCTACACCGGCCAAGGGGATAAAACGAAATGTTTCTATTGCGATGGAGGT 457994 Query 123676 CTAAAAGAATGGACGGAAGGCGACGATG---CTTTCGAATTGCACGCCCGTTGGTTTGAT 123732 || ||||| || |||| |||||||| | | ||| ||| ||||||||||| ||| Sbjct 457995 CTCAAAGATTG---GGAAAACGACGATGTTCCATGGGAACAGCATGCCCGTTGGTTCGAT 458051 Query 123733 CGGTGTTCGTACGT 123746 || ||| |||| || Sbjct 458052 CGTTGTGCGTATGT 458065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488416544977200