Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq44 212 6e-50 seq4 123 2e-23 seq36 118 1e-21 seq158 111 2e-19 >seq44 Length=1464967 Score = 212 bits (234), Expect = 6e-50 Identities = 348/496 (70%), Gaps = 8/496 (2%) Strand=Plus/Plus Query 24800 GCGTACTTTGTCGAGTGGGGTGTGTACCCGCGCCAGTTTCCCGTCGACAAGGTGCCCGCG 24859 |||||||| || || ||||| ||||||||||| |||| ||||| ||||| || |||| Sbjct 1426406 GCGTACTTCGTAGAATGGGGCGTGTACCCGCGAAAGTTCCCCGTAGACAAAGTTCCCGTT 1426465 Query 24860 CCCAACCTCTCGCACTTGCTCTACGGCTTTGTGCCCATCTGCGGCGGCGCGGGCATCAAC 24919 |||||||| | ||||| | |||||||| | || || |||||||| | ||||| ||| Sbjct 1426466 CCCAACCTGACCCACTTATTGTACGGCTTCATCCCGATTTGCGGCGGTGATGGCATTAAC 1426525 Query 24920 GATGCGCTAAA--AACTGTGCCGGGCAGCTTCGAGGCGCTGCAACGATCGTGCGCCGGCC 24977 || | || || | || ||| || ||| | || |||||||| || ||| ||| | Sbjct 1426526 GACAGTTTGAAGGAAAT-TGA-GGGTAGTTTCCAAGCACTGCAACGCTCCTGCAGCGGTC 1426583 Query 24978 GCGCCGACTTCAAGGTGGCCATCCACGATCCGTGGGCGGCCATACAGAAACCGCAGAAAG 25037 | | |||||||| || ||||||||||||| ||||| || | || || || ||||| | Sbjct 1426584 GGGAAGACTTCAAAGTATCCATCCACGATCCTTGGGCTGCTTTGCAAAAGCCACAGAAGG 1426643 Query 25038 GCGTGTCCGCGTGGAACGAGCCGTACAAGGGCAACTTTGGCCAGCTGATGGCGCTGAAGC 25097 || | || | ||||| ||||| ||||||||||| || || || |||||| | |||| | Sbjct 1426644 GCTTATCGTCCTGGAATGAGCCTTACAAGGGCAATTTCGGTCAACTGATGATGTTGAAAC 1426703 Query 25098 GCGCCTACCCGCACCTCAAAGTGCTGCCCTCGATCGGCGGCTGGACGCTGTCCGACCCGT 25157 ||| | || |||| || | || || || |||| || ||||| ||| | || || | Sbjct 1426704 AGGCCAAACCTGACCTGAAGATTCTTCCTTCAGTCGGTGGTTGGACCCTGGCTGATCCCT 1426763 Query 25158 TCTTCCACATGCACGACAAGGCGGCGCGCCAGAC--GTTTATCGACTCGGTGCAAGAGTA 25215 ||||| | | | ||||| | | | |||| || | | || || | || | Sbjct 1426764 TCTTCTTCTTCGATGACAAAGTTAAGAG--AGACCGCTTCGTTGGTTCAGTCAAGGACTT 1426821 Query 25216 CCTCGTCACCTGGAAGTTCTTTGACGGCGTCGACCTCGATTGGGAGTTTCCCGGCGGCAA 25275 | |||||||| ||||| || ||||| || | ||||||||||| || || || || Sbjct 1426822 TTTACAGACCTGGAAATTCTTCGATGGCGTTGATATTGATTGGGAGTTCCCTGGAGGTAA 1426881 Query 25276 GGGCGCCAACCCGGAC 25291 ||| || ||||| ||| Sbjct 1426882 GGGAGCTAACCCTGAC 1426897 >seq4 Length=2913607 Score = 123 bits (136), Expect = 2e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 116472 GCACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGA 116531 |||||| ||||||||||| ||||| || |||| || ||||||||||| || ||||||| Sbjct 2347857 GCACGGTTTCCACGTGCATGAGTTCGGTGACAACACAAACGGCTGCACATCGGCCGGCGC 2347916 Query 116532 ACACTTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGG 116591 ||||| ||||| ||||| ||||| | ||| |||| |||| ||||||||||| Sbjct 2347917 GCACTTTAACCCGCTGAAGCAGGAGCACGGTGGCCCCGACGCGTCCGTGCGTCACGTCGG 2347976 Query 116592 TGACCTGGGCAACATTGAGGC 116612 ||| || |||||||||||||| Sbjct 2347977 TGATCTCGGCAACATTGAGGC 2347997 >seq36 Length=1647457 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | |||||||||||||| || |||||||| || ||| |||||| ||| Sbjct 937312 AAATGCAGAGTGGACTCTTTCTGAATGTTGTAATCTGACAGAGTGCGGCCGTCCTCAAGC 937371 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || || | || || |||||||| || ||||| ||||||||||| || ||| Sbjct 937372 TGTTTTCCGGCAAAGATAAGTCGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGGAT- 937430 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| |||| | | | ||||| ||||| | || ||||| || | |||| |||||||| Sbjct 937431 TTTAGCTTTAACATTCTCAATTGTGTCCGATGGTTCCACTTCCAGTGTGATTGTTTTGCC 937490 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || || ||||| ||||| Sbjct 937491 AGTCAGCGTCTTGACAAAAATTTGCAT 937517 Score = 113 bits (124), Expect = 4e-20 Identities = 153/209 (73%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 ||||| | || || || || || |||||||| ||| | || ||| |||||||| Sbjct 935557 AAATGCAAAGTAGATTCCTTTTGGATATTGTAGTCGGAGAGAGT--ACGGCCGTCCTCGA 935614 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||| || || | || || |||||||| || ||||| |||||||||||||| ||| Sbjct 935615 GCTGCTTACCGGCAAAGATAAGTCGCTGCTGATCCGGAGGAATGCCTTCCTTGTC-CTGA 935673 Query 133573 TCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| | ||| | | ||||| ||||| | |||||||| || | |||| ||||| Sbjct 935674 ATTTTGGCCTTAACATTCTCAATTGTGTCAGAAGGCTCCACTTCAAGTGTGATCGTTTTA 935733 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||| || || ||||| || ||||| Sbjct 935734 CCGGTCAGCGTCTTAACGAATATTTGCAT 935762 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||| || || || || |||||||| | ||| | | | |||||||| Sbjct 455807 AAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCA-TCCTCGAG 455749 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| ||||| ||| | || | ||||||||||| || || ||||| |||||||| ||| Sbjct 455748 CTGTTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGAT 455689 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| ||||| | || ||||| || | || | ||||| || Sbjct 455688 CTTAGCCTTTACATTCTCAATAGTGTCAGATGGTTCCACTTCCAGTGTAATAGTTTTTCC 455629 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||||||| ||||| |||||||| Sbjct 455628 AGTGAGAGTTTTAACGAAGATCTGCAT 455602 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| | ||| | | | ||||||||||| ||||| Sbjct 456251 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCCTCGAGCTGTTTGCC 456193 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||| || || |||||||| ||||| ||||||| ||| Sbjct 456192 AGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGGATCTTTGCCTT 456133 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | ||||| || || | || | |||||||| || || || Sbjct 456132 TACATTCTCAATGGTGTCAGAAGGCTCAACTTCAAGAGTAATAGTTTTGCCAGTAAGGGT 456073 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 456072 CTTGACAAAGATCTGCAT 456055 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | |||||| || || || || |||||||| | ||| | | | ||||| || Sbjct 455579 AAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCA-TCCTCAAG 455521 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| ||||| || | || | ||||||||||| || || |||||||| ||||| ||| Sbjct 455520 CTGTTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGGAT 455461 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||| | | ||| | ||||| | ||||| || || | ||||| |||||| || Sbjct 455460 CTTTGCCTTAACATTCTCGATAGTGTCTGAAGGCTCAACCTCAAGGGTGATGGTTTTACC 455401 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || |||||||| Sbjct 455400 TGTGAGGGTTTTGACAAAGATCTGCAT 455374 Score = 105 bits (116), Expect = 6e-18 Identities = 144/198 (73%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| || | ||| | | | ||||| ||||| ||||| Sbjct 456023 GTTGACTCTTTCTGGATGTTGTAGTCTGAAAGGGTGCGGCCA-TCCTCAAGCTGTTTGCC 455965 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||| || || |||||||| ||||| ||||||| ||| Sbjct 455964 GGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGGATCTTTGCCTT 455905 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| | || ||||| || | || | ||||| || || ||||| Sbjct 455904 TACATTCTCA---GTGTCAGATGGTTCCACTTCCAGTGTAATTGTTTTTCCAGTGAGAGT 455848 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 455847 TTTAACGAAGATCTGCAT 455830 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || || ||||| | ||| ||| || | ||||| || Sbjct 455114 GTTGACTCCTTCTGGATGTTATAATCTGAGAGGGTGCGGCCGTCTTCTAATTGCTTTCCA 455055 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT- 133582 || | || || |||||||| || || || || |||||||| || ||| ||| |||| Sbjct 455054 GCAAAGATCAGTCGCTGCTGATCTGGGGGAATACCTTCCTTATCT-TGAATTTTAGCTTT 454996 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| | ||||| || |||| |||| |||||| || |||| || Sbjct 454995 GACGTTCTCAATAGTGTCTGACGGCTCAACTTCGAGAGTGATGGTTTTACCAGTCAAGGT 454936 Query 133643 TTTTACGAAAATCTGCATGGCTTAT 133667 |||||||||||||||||| ||||| Sbjct 454935 TTTTACGAAAATCTGCAT--CTTAT 454913 >seq158 Length=707457 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT-GGACGAGTCCTCGAGCTGCTTGCC 133522 ||||| |||||||| ||||||||||| || || | | | || || | ||||||||| Sbjct 607273 GTGGATTCTTTCTGGATATTGTAATCAGACAGAGTACGGCCA-TCTTCCAACTGCTTGCC 607215 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| ||||| ||||| |||||||| ||||| || || |||||| ||| Sbjct 607214 GGCGAAGATGAGTCGCTGTTGGTCCGGAGGGATACCTTCTTTATCTTGGATCTTAGCCTT 607155 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||| | | |||||| || | ||||| ||| || || || || || Sbjct 607154 CACATTTTCGATGGTGTCTGAAGCCTCCACCTCAAGGGTGATGGTCTTCCCCGTTAGGGT 607095 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 607094 TTTGACGAATATCTGCAT 607077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483294681556040