Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq616 233 5e-56 seq2 95.1 3e-14 >seq616 Length=113079 Score = 233 bits (258), Expect = 5e-56 Identities = 536/800 (67%), Gaps = 13/800 (2%) Strand=Plus/Minus Query 110363 TGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAA 110422 |||||| || ||||||||| | | ||||| | || || || || || | |||||| | Sbjct 36902 TGAACGGCCACAACACATGCTGATGCGTGTGTCTATAGGAATACACGGTGAAGATATTGA 36843 Query 110423 AGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTAC 110482 |||| ||||| ||| || || | |||| | || ||||| | || || Sbjct 36842 TGCTGCAATTGATACATATAATTTACTGTCGGAAAAATATTTTACCCATGCCAGCCCGAC 36783 Query 110483 CCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAA 110542 ||||| |||| ||| || ||| | |||| ||||| | | | ||| || Sbjct 36782 ATTATTTTCAGCAGCAACGCCACGACCACAGCTATCTTCATGCTTCTTAGTTGCAATGAA 36723 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATTTCTAAAA 110601 |||||| ||||||||| || ||||| | |||||| || |||| | || |||||| Sbjct 36722 GGATGATAGTATTGAAGGCATATATGACACA-TTAAAGCAATGTGCTTTAATATCTAAAT 36664 Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAA 110661 ||||||| ||||| | || ||||| || | | ||||| | |||| || Sbjct 36663 CTGCTGGAGGTATTGGAGTCCATGTTCACTGCATAAGAGCCAAAGGCACTTATATTGCTG 36604 Query 110662 CAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAA 110721 | | || |||| || | ||| ||||| || ||||| |||| | ||| | ||||| | Sbjct 36603 GAACAAATGGTGTCTCCAATGGCCTTGTCCCTATGTTGCGAGTGTATAACAATACTGCCA 36544 Query 110722 AATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTT 110778 |||||| ||||||| || || | | | || | ||||| | || | ||||| | Sbjct 36543 GATATGTAGATCAAGGGGGCAATAAACGTCCTGGAGCTTTTGCAGTATACTTGGAACCAT 36484 Query 110779 GGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA 110838 ||||| ||||||| || ||||||||||| || |||||| || |||||| | Sbjct 36483 GGCATGCAGATATTTTCGAATTCTTAGATCTGAAAAAAAATACTGGCAAAGAAGAAGTAC 36424 Query 110839 GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAG 110898 |||| | || | |||||||| | ||||| | |||||||| |||||| | || | Sbjct 36423 GAGCTAGAGAACTCTTTTATGCTTTATGGATACCTGATTTATTTATGAAAAGAGTAGAGA 36364 Query 110899 AAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATG 110958 |||| | ||| |||||||||||||||| | ||| || || | ||| | | Sbjct 36363 GTAATGAAAATTGGAGTCTTATGTGTCCTCATGACTGTCCAGGCTTAGCAGATTGTTGGG 36304 Query 110959 GAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA 111018 || |||| ||||| | || ||| | ||||||||||||||| ||| || ||| Sbjct 36303 GAGAAGAATTTGAGGCACTATACAAGAAATATGAAAAAGAAAATCGATTTGTTAAGCAAG 36244 Query 111019 TTCCAGCTCAAGAACTTTGGTTCAAA---ATCCTTGAATCACAAGTTGAAACTGGAACTC 111075 || |||||| | || ||| ||| || | ||| ||||||| ||||| ||||| | Sbjct 36243 TTAAAGCTCAGGCTCTGTGG---AAAGCTATTATAGAAGCACAAGTAGAAACGGGAACAC 36187 Query 111076 CTTATATTTTGTATAAAGA-TCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACA 111134 | ||||| ||||||||||| || | || |||||| ||| |||| ||| ||||||| Sbjct 36186 CATATATGTTGTATAAAGACTCGT-GCAACCGCAAAAGTAACCAAAAAAATCTAGGAACT 36128 Query 111135 ATTAAGTCTAGTAATTTGTG 111154 ||||||| || |||||||| Sbjct 36127 ATTAAGTGCAGCAATTTGTG 36108 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 112576 AAGTGACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAA 112635 |||| |||||| | || |||| || || |||||||||||||| | || ||| Sbjct 35991 AAGTTACAAAAATCATAACACAGAATCTTAATAAAATTATTGAAGTTAATTATTACCCAG 35932 Query 112636 TTCAAAAAGC-AAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGA 112694 ||| |||| ||||||| | |||| | || ||||||||||| || || || |||||| Sbjct 35931 TTCCTGAAGCTAAAACATCC-AATATGAGACACAGACCAATTGGTATAGGAGTGCAAGGA 35873 Query 112695 TTAGCTGATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTA 112754 ||||| || |||||| | ||||| ||||| | ||| ||| | || | | || Sbjct 35872 TTAGCAGACACATTTATTCTTATGCGTATTCCATACGATAGTGAACCGGCCATAAAGCTA 35813 Query 112755 AATGAAAAGATTTTCGAAACAATCTATTTCG 112785 ||| || | || || |||||||| |||| || Sbjct 35812 AATCAACAAATATTTGAAACAATTTATTACG 35782 >seq2 Length=2967957 Score = 95.1 bits (104), Expect = 3e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 |||||| || |||||| ||| | |||||| | || || | || || |||||| | Sbjct 2501344 CATTTGCGAGATGATGATTTGGTCATATTCAATCGTCAGCCTACCCTTCACAAAATGAGT 2501285 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 ||||||| ||||| || |||||| | | | | |||||||| | ||| ||||| | Sbjct 2501284 ATGATGGGTCATAGGGTAAAAGTACTTCCATGGTCAACATTTCGTATGAATTTAAGTTGT 2501225 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | | || || || || ||||||||||| ||||| |||||| | ||||| || ||||| Sbjct 2501224 ACTTCACCATACAACGCTGATTTTGATGGTGATGAGATGAATTTACATGTTCCGCAATCT 2501165 Query 305489 AAGGTTACAA 305498 | || |||| Sbjct 2501164 ATGGAGACAA 2501155 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 304951 ATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCG 305010 ||| || | ||||||||| | ||| | || ||||||| ||||| || | ||| | Sbjct 2501696 ATCAGGTAAACCTTTAAAAGCTATCAAAGCTCGTCTTAAAGGAAAAGAAGGCAGGATTAG 2501637 Query 305011 AGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTC 305070 ||| ||||| |||||||| ||||| |||||| ||| | | ||| ||||||||||| | Sbjct 2501636 AGGAAATCTTATGGGAAAGCGTGTCGATTTTTCGGCACGTACTGTCATCACACCTGA--C 2501579 Query 305071 TCAAATT--AGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACATTT 305128 |||||| || || || || ||||||| |||| || || ||| ||||||| Sbjct 2501578 CCAAATTTACGTATTGATCAAGTAGGAGTACCAAGATCTATCGCACAAAATTTAACATTC 2501519 Query 305129 CCAGA 305133 ||||| Sbjct 2501518 CCAGA 2501514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186495434760031