Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq616 673 0.0 seq200 113 6e-20 >seq616 Length=113079 Score = 673 bits (746), Expect = 0.0 Identities = 1216/1755 (69%), Gaps = 36/1755 (2%) Strand=Plus/Plus Query 68394 TGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAA 68453 ||| ||||| ||||||||||| ||||| || ||||||| ||| | |||| || || Sbjct 35162 TGCAGGTTTAGTACGTAGATAATACATTCCTGTTTTCAAACCCATTTTCCAGGAATAAAA 35221 Query 68454 ATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACT 68513 ||| ||| ||||| || |||| | || || || | |||||| || | ||||| || Sbjct 35222 ATGAATAGAAGTTAGCTTCCCATAATTAGGTTCTGCAACATGAATGTTGAATGATTGGCT 35281 Query 68514 TTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTC 68573 |||||| || || ||||| || ||||| ||||||| ||| | |||| || |||||| Sbjct 35282 TTGATCTATAAATGCTCCCCTGTCTGCTGCCATTTGAATAGTGGTCTTAACAGAAATTTC 35341 Query 68574 CCAAATAGTCTT--AAAAATCTGTTTGATATCATCTGGAAGG--CTCG-TATTTTGAATG 68628 ||||| ||| || | |||||| | || || | |||| ||| | |||| ||| Sbjct 35342 CCAAACAGTTTTGTACAAATCTCTA--ATTTCTTTAGGAATTACCTCAATGCTTTGTATG 35399 Query 68629 GATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTT 68688 || ||| | | || || | || || || || |||| |||||||| || || Sbjct 35400 GAGCCATTGTTGTGGATGATAAGGTTTTTCATGTCTTCATCCCACAATTCAGCTTCTGTG 35459 Query 68689 AAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACAC---TCTACGA 68745 | | | | | ||||| ||||||| | ||||||||| || |||| || ||| || Sbjct 35460 AGATCACGTAATAGATGGTGATTAACAACTTGAAATTCACCTGATAGAACGCGTCTCTGA 35519 Query 68746 GTGTAAATATTACTGGTATATGGTTCCACA-GATTCATTATTTCCCAGAATTTGAGCAGT 68804 || ||||| ||| ||||| | || | || |||||||| || ||||||||||| || Sbjct 35520 ---TATATATTGGAGGT-TATGGGTTCAAATGACTCATTATTGCCAAGAATTTGAGCTGT 35575 Query 68805 TGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTT 68864 ||||| || ||||| || || || || | |||||||| |||||| || ||||| Sbjct 35576 AGATGCTGTGGGCATGGGAGCTACTAAAAGTGAGTTTCTAAGGCCATGTTTTGCAATTTT 35635 Query 68865 ATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTG 68924 ||||| | |||| ||||| | | || ||| |||||| | ||||||||| Sbjct 35636 TTCTTTCAAGGCAGTCCAGTCCCACAAGTTAGTTGGAGTCTTATTCCACATATCGTATTG 35695 Query 68925 TAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGC 68984 || |||||| | || || || | ||| |||||||| ||| | | ||| || Sbjct 35696 TAAAATTCCTTGGCTCGCCGGACTGCCTTCATAAGTTTCATAGACTCCATATTTTTCGGC 35755 Query 68985 TAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAG 69044 || || ||| ||||| || | ||| ||||||||||||||||| || || | | ||| || Sbjct 35756 TAATTGACAGCTTGCTTCAAGTGCTCCGTAATAAATTGTTTCAAATATTTGTTGATTTAG 35815 Query 69045 ATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCC 69104 | | || | ||||||| ||||| | | | ||||||||||| ||||| ||||| Sbjct 35816 CTTTATGGCCGGTTCACTATCGTATGGAATACGCATAAGAATAAATGTGTCTGCTAATCC 35875 Query 69105 CTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGG 69164 || || || ||||| || ||||| |||||| |||| || ||| |||||| |||| || Sbjct 35876 TTGCACTCCTATACCAATTGGTCTGTGTCTCATATTGGATGTTTTAGCTTCAGGAACTGG 35935 Query 69165 ATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTT 69224 |||||||||| || ||||||||||||||||| | || | ||| || || || Sbjct 35936 GTAATAATTAACTTCAATAATTTTATTAAGATTCTGTGTTATGATTTTTGTAACTTCTTT 35995 Query 69225 TAGTTTGAGAAAATCAAATCGTCCATCTATA---ACAAACATATTCAGTGCTACAGATGC 69281 |||||| ||||| || | |||| | |||||||| || ||||| | ||| || Sbjct 35996 TAGTTTATCAAAATTGTATGTTTTATCTTCATTGACAAACATGTTAAGTGCAATAGAGGC 36055 Query 69282 TAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATT 69341 | ||| ||||| || ||||||| || | || | | ||| || ||||| | ||| Sbjct 36056 CAAATTGCAAACAGCAACCTCATCAGCTGAAGTGTACTCCACTATTTCAGTACACAAATT 36115 Query 69342 ACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTA 69401 || || || ||||| || ||||||| || ||||| || ||| || | ||| || || Sbjct 36116 GCTGCACTTAATAGTTCCTAGATTTTTTTGGTTACTTTTGCGGTTGCACGAGTCTTTATA 36175 Query 69402 AAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCT 69461 | ||| | || || || ||||| | || | ||| ||||||| |||||| | || ||| Sbjct 36176 CAACATATATGGTGTTCCCGTTTCTACTTGTGCTTCTATAATAGCTTTCCACA-GAGCCT 36234 Query 69462 -AGCATTTATTACGGTCTTGTAA---CGCTTCTCTTTTTCATATT--GTGTATATAGCCG 69515 ||| |||| || ||| | || || ||||||||||||| |||||| ||| Sbjct 36235 GAGC-TTTA--ACTTGCTTAACAAATCGATTTTCTTTTTCATATTTCTTGTATAGTGCC- 36290 Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 || ||||| ||||||||| ||| | || || ||||| |||| |||||||| | Sbjct 36291 -TCAAATTCTTCTCCCCAACAATCTGCTAAGCCTGGACAGTCATGAGGACACATAAGACT 36349 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 ||| |||| | || |||| ||||||||||| ||| || ||||| | ||| ||| Sbjct 36350 CCAATTTTCATTACTCTCTACTCTTTTCATAAATAAATCAGGTATCCATAAAGCATAAAA 36409 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 ||| ||||| | || |||||| || || ||||||||||| ||||| | || || | Sbjct 36410 GAGTTCTCTAGCTCGTACTTCTTCTTTGCCAGTATTTTTTTTCAGATCTAAGAATTCGAA 36469 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCC 69755 |||||| | |||||||||||| | |||| || | |||| || |||||||| || || Sbjct 36470 AATATCTGCATGCCATGGTTCCAAGTATACTGCAAAAGCTCCAGGACGTTTATTGCCCCC 36529 Query 69756 CTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGA 69815 ||||||| ||||||||||| || ||||| |||| || ||| || | || ||||| || Sbjct 36530 TTGATCTACATATCTGGCAGTATTGTTATACACTCGCAACATAGGGACAAGGCCATTGGA 36589 Query 69816 TTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGA-- 69873 |||||||||||||| ||||||| | ||| | || | || | | | | || || Sbjct 36590 GACACCATTTGTTCCAGCAATATAAGTGCCTTTGGCTCTTAT-GCAGTGA-ACATGGACT 36647 Query 69874 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCC 69933 || || ||||| || |||||| |||| |||||| | || |||||||||||||| || Sbjct 36648 CCAATACCTCCAGCAGATTTAGATATTAAAGCACATTGCTTTAATGTGTCATATATGCCT 36707 Query 69934 TCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTT 69993 || || |||||||| |||| || | || || ||| | || | || ||| Sbjct 36708 TCAATACTATCATCCTTCATTGCAACTAAGAAGCATGAAGATAGCTGTGGTCGTGGCGTT 36767 Query 69994 CCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTAT 70053 | || ||||||||| || || || || || ||||||| || || | ||| ||| Sbjct 36768 GCTGCTGAAAATAATGTCGGGCTGGCATGGGTAAAATATTTTTCCGACAGTAAATTATAT 36827 Query 70054 GTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACAT 70112 || ||||| || | || ||||| ||| | || |||||||| | |||||||||| ||| Sbjct 36828 GTATCAATTGCAGCATCAATATCTTCACCG-TGTATTCCTATAGACACACGCATCAGCAT 36886 Query 70113 ATGCTGAGGTCGTTC 70127 || || || ||||| Sbjct 36887 GTGTTGTGGCCGTTC 36901 >seq200 Length=575180 Score = 113 bits (124), Expect = 6e-20 Identities = 159/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||| || || || || || || ||||||||||| || |||||||| | Sbjct 474937 CCTCATCTCTAGAGATCAACTCATTGCTGAAGGTAAGTCCAGGCATGAGTCCACGCTTCT 474878 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| ||||||| ||||| |||||| ||||| |||||||| || || ||||| | Sbjct 474877 TCAGCCAGAATATGGAGGCAAAGCTTCCAGAGAAGAAAATGCCTTCGACGGCGGCAAAAG 474818 Query 39759 CAACAAGTCTCTCTCCGTAACT---TGTATCATTATGTATCCACTTCTGTGCCCAATCAG 39815 | || | ||||| ||| | | || | | ||||||| | | ||||| || | Sbjct 474817 CCACGATCCTCTCGCCGAAGGTGGCGGTCTTGCTCGCGATCCACTGCAGCGCCCAGTCTG 474758 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 | |||||||| ||||| |||| || || || || || || || Sbjct 474757 CCTTCTTCTTCACACATGGCAAAGTCTCAATGGCGTTGAACAG 474715 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTC 40162 ||||||| ||| ||||| || | ||||| || || || || |||||||||||||| | | Sbjct 473531 TTTGATAGATCAACTTCCTCCACGGTCCAGAAAGAAGCTTCGGCCTTTTTGTACATCTCC 473472 Query 40163 CATATATCACGATATTGTATTGGAAAAATAACAAA 40197 || |||||| | ||||| || || ||||||||||| Sbjct 473471 CAAATATCAGGGTATTGAATGGGGAAAATAACAAA 473437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686729594080440