Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq116 136 2e-27 seq36 122 5e-23 seq158 89.7 3e-13 >seq116 Length=882076 Score = 136 bits (150), Expect = 2e-27 Identities = 173/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 47128 CACTTTTAAAGATTGGCCTCGTGGTTTGCGTCAGAGACCAAAAGAGTTAGCGGACGCGGG 47187 || ||| || |||||||| ||| | |||| || | |||| | || | ||||| || || Sbjct 457880 CAGTTTCAAGGATTGGCCGCGTTGCATGCGCCAAAAACCAGAGGAACTCGCGGAAGCAGG 457939 Query 47188 CTTCTTTTATACTGGTGAAGGTGATAAAACGAAGTGTTATTATTGTGATGGTGGTCTGAG 47247 || || || || || |||| ||||||||||| |||| ||||| ||||| ||||| | Sbjct 457940 ATTTTTCTACACCGGCCAAGGGGATAAAACGAAATGTTTCTATTGCGATGGAGGTCTCAA 457999 Query 47248 AGATTGGAACGAAGAAGATATACCTTGGGAGGAGCACGCTCGTTGGTTTGATCGTTGTGT 47307 ||||||| | | || ||| | || ||||| |||| || |||||||| |||||||||| Sbjct 458000 AGATTGGGAAAACGACGATGTTCCATGGGAACAGCATGCCCGTTGGTTCGATCGTTGTGC 458059 Query 47308 CTACGTTAAATTGGTAAAAGGAGAAGATTTTATTCAAAGAGTTAAATCGGAAGCGTGT 47365 || || || | || ||||| |||| | | || || || ||||||||||||| Sbjct 458060 GTATGTGCAACTTGTTAAAGGCCGTGATTATGTCCAGAGGGTATTATCGGAAGCGTGT 458117 Score = 104 bits (114), Expect = 1e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 46847 ACACCCGAAGTGATGGCACGTAACGGATTTTATTATCTTGGAAGAGGTGATGAAGTTCGA 46906 ||||| |||| | | || ||||| || || || || ||||| | |||||||||||||| Sbjct 457581 ACACCTGAAGAGTTAGCTCGTAATGGTTTCTACTACCTTGGGCGCGGTGATGAAGTTCGC 457640 Query 46907 TGCGCCTTTTGCAAGGTTGAGATCATGCGTTGGGAAGAGGGTGATGATCCTGCCGAAGAC 46966 || || || || || || || || ||||| |||| || || || || ||||| |||| Sbjct 457641 TGTGCATTCTGTAAAGTAGAAATTATGCGATGGGCGGAAGGAGACGACCCTGCGAAAGAT 457700 Query 46967 CATAAACGTTGGGCTCCTCAGTGTCCGTTCGTAAGAAATGTT 47008 || ||||| ||||| || || |||||||| || | ||| || Sbjct 457701 CACAAACGATGGGCGCCCCAATGTCCGTTTTTACGTAATCTT 457742 >seq36 Length=1647457 Score = 122 bits (134), Expect = 5e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || ||| |||||||||||||| ||||| ||||| || || Sbjct 455591 AGACGAAGTACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGG 455532 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || ||||| ||||| |||||||| || || ||||| ||||| || || | || || Sbjct 455531 CCATCCTCAAGCTGTTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCT 455472 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| |||| ||||| | || |||||| ||| || || | ||| Sbjct 455471 TTGTCTTGGATC-TTTGCCTTAACATTCTCGATAGTGTCTGAAGGCTCAACCTCAAGGGT 455413 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||||||| || | ||||| ||||| |||||||| Sbjct 455412 GATGGTTTTACCTGTGAGGGTTTTGACAAAGATCTGCAT 455374 Score = 118 bits (130), Expect = 7e-22 Identities = 161/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || ||||| |||||| || |||||||||||||| || || || Sbjct 455135 AGACGGAGCACCAGGTGAAGAGTTGACTCCTTCTGGATGTTATAATCTGAGAGGGTGCGG 455076 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | ||| || || ||||| || | ||||| || || || || | || ||| Sbjct 455075 CCGTCTTCTAATTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCTGGGGGAATACCTTCC 455016 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||| | ||| ||| | ||| |||||| ||| ||||| | || Sbjct 455015 TTATCT-TGAATTTTAGCTTTGACGTTCTCAATAGTGTCTGACGGCTCAACTTCGAGAGT 454957 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || |||||||| || || ||||| || ||||||||||| || Sbjct 454956 GATGGTTTTACCAGTCAAGGTTTTTACGAAAATCTGCATCTT 454915 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||| || ||||| |||||| || ||||| || || ||| Sbjct 455372 CCACCACGAAGACGGAGCACCAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAA 455313 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || ||||| ||||| ||||| || || |||||||||||||| || || Sbjct 455312 AGGGTACGGCCATCCTCAAGCTGTTTGCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGA 455253 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || || |||||| |||||| |||| | ||| |||||| ||| || Sbjct 455252 ATGCCTTCTTTGTCTTGGATCTTGGCCTTTACATTTTCAATAGTGTCTGAAGGCTCAACC 455193 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || ||||| || || | || || ||||| |||||||| Sbjct 455192 TCAAGGGTGATTGTTTTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 455146 Score = 109 bits (120), Expect = 3e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || ||| |||||||||||||| ||||| ||||| || || Sbjct 455819 AGACGAAGTACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGG 455760 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || ||||| ||||| || || || ||||| ||||| || || | |||||| Sbjct 455759 CCATCCTCGAGCTGTTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCC 455700 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 |||||| |||||| |||| ||| ||||| |||||||||| || Sbjct 455699 TTGTCTTGGATCTTAGCCTTTACATTCTCAATAGTGTCAGATGGTTCCACTTCCAGTGTA 455640 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || | ||||| || || |||||||| Sbjct 455639 ATAGTTTTTCCAGTGAGAGTTTTAACGAAGATCTGCAT 455602 Score = 104 bits (114), Expect = 1e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||| || | || ||||| | ||| |||||||| || || || || || Sbjct 935535 GCCGCCGCGAAGTCGTAGTACTAAATGCAAAGTAGATTCCTTTTGGATATTGTAGTCGGA 935594 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || ||||||||||| || | ||||| || ||||| || Sbjct 935595 GAGAGTACGGCCGTCCTCGAGCTGCTTACCGGCAAAGATAAGTCGCTGCTGATCCGGAGG 935654 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || |||||||| ||| ||| | ||||| | ||||||||| ||||| Sbjct 935655 AATGCCTTCCTTGTC-CTGAATTTTGGCCTTAACATTCTCAATTGTGTCAGAAGGCTCCA 935713 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || |||||||||||||| | ||| || || || || ||||| Sbjct 935714 CTTCAAGTGTGATCGTTTTACCGGTCAGCGTCTTAACGAATATTTGCAT 935762 >seq158 Length=707457 Score = 89.7 bits (98), Expect = 3e-13 Identities = 176/258 (68%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 34455 TGAACAAATACATATCCAATCGTCG-CCGCCTCTAAGACGCAACACCAAATGGAGAGTGC 34513 ||| || | ||| | |||||| | || |||||||| | | |||||| || |||||| Sbjct 607329 TGAGCATAAACAAAACCAATCATTTACCTCCTCTAAGCCTAAGCACCAAGTGAAGAGTGG 607270 Query 34514 TCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAA 34573 || || || || || ||||| || || || || | ||||| | || || ||||| | Sbjct 607269 ATTCTTTCTGGATATTGTAATCAGACAGAGTACGGCCATCTTCCAACTGCTTGCCGGCGA 607210 Query 34574 ATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG 34633 | || | |||||||||||||| || | || || || ||| |||||| || | Sbjct 607209 AGATGAGTCGCTGTTGGTCCGGAGGGATACCTTCTTTATCTTGGATCTTAGCCTTCACAT 607150 Query 34634 ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 | || |||||| |||||| || | ||| || || || || |||| ||||| | Sbjct 607149 TTTCGATGGTGTCTGAAGCCTCCACCTCAAGGGTGATGGTCTTCCCCGTTAGGGTTTTGA 607090 Query 34694 CAAAAATCTGCA-TGTTG 34710 | || ||||||| ||||| Sbjct 607089 CGAATATCTGCATTGTTG 607072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314649543706943