Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq158 185 2e-41 seq36 136 9e-27 seq20869 102 2e-16 >seq158 Length=707457 Score = 185 bits (204), Expect = 2e-41 Identities = 173/220 (79%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| || || || | ||| |||||||||||||| |||| ||||||||| | || ||| | Sbjct 607295 AAGCCTAAGCACCAAGTGAAGAGTGGATTCTTTCTGGATATTGTAATCAGACAGAGTACG 607236 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| | |||||| || |||||||| ||||| |||||||| || || |||||||| Sbjct 607235 GCCATCTTCCAACTGCTTGCCGGCGAAGATGAGTCGCTGTTGGTCCGGAGGGATACCTTC 607176 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 || ||||||||||| ||||||| ||||||||||||||| | ||||| || | || Sbjct 607175 TTTATCTTGGATCTTAGCCTTCACATTTTCGATGGTGTCTGAAGCCTCCACCTCAAGGGT 607116 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| ||||| ||||| | ||||| | ||| | |||||| Sbjct 607115 GATGGTCTTCCCCGTTAGGGTTTTGACGAATATCTGCATT 607076 >seq36 Length=1647457 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || |||||||| || || | ||||| || | | ||| | ||||||| Sbjct 937534 AGCACCAAGTGAAGTGTGGATTCCTTCTGAATGTTGTAGTCTGATAGAGTGCGCCCATCT 937593 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| |||||| || || || || || || || || || || ||||| ||||| |||||| Sbjct 937594 TCTAACTGCTTTCCGGCAAAAATGAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCT 937653 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||| ||| || |||||||| | || || || || ||||| || Sbjct 937654 TGGATTTTGGCCTTCACATTTTCAATAGTGTCTGAAGGCTCAACTTCCAAAGTGATAGTT 937713 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || ||||| |||| ||| | |||||||| Sbjct 937714 TTCCCAGTTAAAGTCTTTACGAAGATCTGCATTTT 937748 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| || || | || | ||| ||||| ||||||| |||||| |||| | ||| Sbjct 935542 CGAAGTCGTAGTACTAAATGCAAAGTAGATTCCTTTTGGATATTGTAGTCGGAGAGAGTA 935601 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || || ||||||||||| || || || || ||||| ||| Sbjct 935602 CGGCCGTCCTCGAGCTGCTTACCGGCAAAGATAAGTCGCTGCTGATCCGGAGGAATGCCT 935661 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || || || ||| ||| || || ||||| || | ||||| || | Sbjct 935662 TCCTTGTCCTGAATTTTGGCCTTAACATTCTCAATTGTGTCAGAAGGCTCCACTTCAAGT 935721 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| || || |||| || || | ||| | |||||| Sbjct 935722 GTGATCGTTTTACCGGTCAGCGTCTTAACGAATATTTGCAT 935762 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| ||||| || || || |||| ||||| |||| | || Sbjct 455367 ACGAAGACGGAGCACCAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAAAGGGT 455308 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || ||||| || || |||||||| | || |||||||| || ||||| || Sbjct 455307 ACGGCCATCCTCAAGCTGTTTGCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGAATGCC 455248 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||||||||| ||| ||| ||| || |||||||| | || || || | Sbjct 455247 TTCTTTGTCTTGGATCTTGGCCTTTACATTTTCAATAGTGTCTGAAGGCTCAACCTCAAG 455188 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| || ||||| || Sbjct 455187 GGTGATTGTTTTGCCAGT 455170 Score = 123 bits (136), Expect = 6e-23 Identities = 162/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || ||||| || || | || |||||||| ||||| || | |||||||| | || ||| Sbjct 937297 CGGAGTCTGAGTACTAAATGCAGAGTGGACTCTTTCTGAATGTTGTAATCTGACAGAGTG 937356 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || ||||| || || || ||||||||||| || || || || ||||| ||| Sbjct 937357 CGGCCGTCCTCAAGCTGTTTTCCGGCAAAGATAAGTCGCTGCTGATCTGGAGGAATGCCT 937416 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || ||||| ||| || || ||| || || ||||| || | |||||| || | Sbjct 937417 TCCTTATCCTGGAT-TTTAGCTTTAACATTCTCAATTGTGTCCGATGGTTCCACTTCCAG 937475 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| |||| || || | || | |||||| Sbjct 937476 TGTGATTGTTTTGCCAGTCAGCGTCTTGACAAAAATTTGCAT 937517 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || |||||||| ||||| | |||||||| | | || | ||||| Sbjct 455813 AGTACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATCC 455754 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || |||||||| | ||| || ||||| || ||||| || ||||||||| Sbjct 455753 TCGAGCTGTTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCT 455694 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || || ||||| || | |||||| || | || || || Sbjct 455693 TGGATCTTAGCCTTTACATTCTCAATAGTGTCAGATGGTTCCACTTCCAGTGTAATAGTT 455634 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | |||||| | ||| | ||||| Sbjct 455633 TTTCCAGTGAGAGTTTTAACGAAGATCTGCAT 455602 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || ||||| ||||| || || || |||| ||||| |||| | || Sbjct 456275 CGAAGACGAAGCACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 456216 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || ||||| || ||||||||||| | ||| || ||||| || ||||| ||| Sbjct 456215 CGGCCATCCTCGAGCTGTTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCT 456156 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||||||||||||| ||| ||| || |||||||| || | || || || | Sbjct 456155 TCTTTGTCTTGGATCTTTGCCTTTACATTCTCAATGGTGTCAGAAGGCTCAACTTCAAGA 456096 Query 225673 GTGATCGTCTTGCCCGT 225689 || || || ||||| || Sbjct 456095 GTAATAGTTTTGCCAGT 456079 Score = 120 bits (132), Expect = 7e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| ||||| || || || |||| || ||||| | | || | || ||| Sbjct 455129 AGCACCAGGTGAAGAGTTGACTCCTTCTGGATGTTATAATCTGAGAGGGTGCGGCCGTCT 455070 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| ||||| ||||| ||||| ||||| || || || || |||||||||||||| ||| Sbjct 455069 TCTAATTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCTGGGGGAATACCTTCCTTATCT 455010 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| || || || || || |||||||| | || || || | ||||| || Sbjct 455009 TGAAT-TTTAGCTTTGACGTTCTCAATAGTGTCTGACGGCTCAACTTCGAGAGTGATGGT 454951 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTAT 225718 || || ||||| ||||||| ||| | ||||| |||| Sbjct 454950 TTTACCAGTCAAGGTTTTTACGAAAATCTGCATCTTAT 454913 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || |||||||| ||||| | |||||||| | | || | ||||| Sbjct 455585 AGTACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATCC 455526 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || ||||| | ||| || ||||| || ||||| ||||| |||||| Sbjct 455525 TCAAGCTGTTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCT 455466 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| ||| ||||| |||||||| | || || || | ||||| || Sbjct 455465 TGGATCTTTGCCTTAACATTCTCGATAGTGTCTGAAGGCTCAACCTCAAGGGTGATGGTT 455406 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || || | ||||| Sbjct 455405 TTACCTGTGAGGGTTTT 455389 Score = 114 bits (126), Expect = 3e-20 Identities = 154/212 (73%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| ||||| || ||||| |||| ||||| || | | || | ||||| Sbjct 456038 AGCACCAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAGTCTGAAAGGGTGCGGCCATCC 455979 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || |||||||| | ||| || ||||| || ||||| ||||| |||||| Sbjct 455978 TCAAGCTGTTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCT 455919 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| ||| ||| ||||| || | |||||| || | || || || Sbjct 455918 TGGATCTTTGCCTTTACA--TTC-TCAGTGTCAGATGGTTCCACTTCCAGTGTAATTGTT 455862 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | |||||| | ||| | ||||| Sbjct 455861 TTTCCAGTGAGAGTTTTAACGAAGATCTGCAT 455830 >seq20869 Length=10639 Score = 102 bits (112), Expect = 2e-16 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 7536 ATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGAT 7595 ||| | |||| || ||| |||| || ||| |||| || ||||| ||| |||| || Sbjct 4067 ATTAATTGGTGATGATCAAATTTATAATACAATTGTTACAGCTCATGCATTTATTATAAT 4008 Query 7596 TTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAAT 7655 ||| ||| | || || || |||| || || || || ||||||||||| || |||||||| Sbjct 4007 TTTTTTTATAGTAATACCTATTATAATTGGGGGATTTGGAAATTGATTAGTACCTTTAAT 3948 Query 7656 GATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715 | || || || ||||| || ||||| | | || |||||||| |||||| | | || Sbjct 3947 ATTGGGGGCCCCAGATATAGCCTTTCCCCGAATAAATAATATAAGATTTTGACTTTTGCC 3888 Query 7716 GCCTTCCTTATTTCTA 7731 || || ||| | ||| Sbjct 3887 CCCCTCTTTAATACTA 3872 Score = 98.7 bits (108), Expect = 2e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||||||||| |||||||||||||| | || ||||| ||||| || | Sbjct 3479 TTCTGGATGACCAAAAAATCAAAATAAATGTTGATATAAAATTGGATCTCCTCCTCCAGC 3538 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||||| ||||| ||||||| ||| ||||| Sbjct 3539 AGGATCAAAAAATGATGTATTTAAATTTCGATCTGTTAA 3577 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 371397 TCTCATATTAAATATCGTAGTAATAAAGTTTATAGCGCCTAGAAGAGAAGATATACCTGC 371456 || |||||||| || ||||||||||| || || || |||| || ||| || |||||||| Sbjct 3689 TCGCATATTAATAATTGTAGTAATAAAATTAATTGCTCCTAAAATAGATGAAATACCTGC 3748 Query 371457 AAGATGTAAACTAAATATTGCTAAATCGACGGAACCGCCGGAGTGAGCTACAATAGAACT 371516 | ||||||| ||| ||||||||||| || || | || ||||| | | |||| Sbjct 3749 TAAATGTAAAGAAAAAATTGCTAAATCAACAGATCTTCCACTATGAGCAATATTAGATGA 3808 Query 371517 TAACGGCGGGTAAACTGTTCAGCCGGT 371543 ||| || ||||| |||||||| || || Sbjct 3809 TAAAGGTGGGTATACTGTTCAACCTGT 3835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192212305604474