Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq116 116 3e-21 seq4 91.5 1e-13 seq36 86.0 5e-12 >seq116 Length=882076 Score = 116 bits (128), Expect = 3e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 104735 AACGGGTTCTACTATTTGGGGCGCGCGGACGAAGTGCGCTGCGCGTTCTGCAAAGTGGAA 104794 || || |||||||| | ||||||| || ||||| ||||| || ||||| ||||| ||| Sbjct 457602 AATGGTTTCTACTACCTTGGGCGCGGTGATGAAGTTCGCTGTGCATTCTGTAAAGTAGAA 457661 Query 104795 ATAATGCGCTGGTTGGAGGGCGACGACCCGGCCGTAGATCATAAACGATGGGCGCCACAG 104854 || ||||| ||| ||| || |||||||| || |||||| |||||||||||||| || Sbjct 457662 ATTATGCGATGGGCGGAAGGAGACGACCCTGCGAAAGATCACAAACGATGGGCGCCCCAA 457721 Query 104855 TGCCCGTTTTTGCGAAA 104871 || |||||||| || || Sbjct 457722 TGTCCGTTTTTACGTAA 457738 >seq4 Length=2913607 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 107558 GTTGCCCAAATCGCCGACGTGACGCTCCGCGGCGTCGGGCGCGCCATGCTGCTGATGCGT 107617 |||||| | ||| |||||||||||| | | |||||||| | || |||| ||| | | Sbjct 2347989 GTTGCCGAGATCACCGACGTGACGCACGGACGCGTCGGGGCCACCGTGCTCCTGCTTCAG 2347930 Query 107618 AGGATTAAAGTGTTCGCCTGCCGACGTGCACCCATTGCTTGTGTCGCCAAATTCGTGCAC 107677 || |||||||| |||| ||||| ||||| || || | |||| || || || ||||| Sbjct 2347929 CGGGTTAAAGTGCGCGCCGGCCGATGTGCAGCCGTTTGTGTTGTCACCGAACTCATGCAC 2347870 Query 107678 GTGAAAACCGTGC 107690 ||| ||||||||| Sbjct 2347869 GTGGAAACCGTGC 2347857 >seq36 Length=1647457 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||||||||| ||| |||| |||||||| || || ||||| |||||| Sbjct 937517 ATGCAAATTTTTGTCAAGACGCTGACTGGCAAAACAATCACACTGGAAGTGGAACCATCG 937458 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || ||| ||||| || || |||||| |||| ||||| Sbjct 937457 GACACAATTGAGAATGTTAAAGCTAAAATCCAGGATAAGGAAGGCATTCCTCCAGATCAG 937398 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | ||||| | ||| || ||||| | || || ||| || | ||||| || Sbjct 937397 CAGCGACTTATCTTTGCCGGAAAACAGCTTGAGGACGGCCGCACTCTGTCAGATTACAAC 937338 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||| || || || |||||||| | | || |||||||| Sbjct 937337 ATTCAGAAAGAGTCCACTCTGCATTTAGTACTCAGACTCCGCGGTGG 937291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421703905862296