Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq44 205 7e-48 seq36 114 9e-21 seq175 84.2 2e-11 >seq44 Length=1464967 Score = 205 bits (226), Expect = 7e-48 Identities = 761/1188 (64%), Gaps = 31/1188 (3%) Strand=Plus/Minus Query 5752 TTCATGGAGTTTAACAAGTCGCCGTTGTCCGCGTCGATTTCCCATCCAAATAGACCCCCC 5811 ||||| | ||| | | || |||||||| ||||| |||||||| | || ||||| || Sbjct 1427580 TTCATTGCGTTAAGAATATCACCGTTGTCAGCGTCTATTTCCCAAGCGAAAAGACCGCCT 1427521 Query 5812 AGCCCCTTTTGGATGACATATTTTCCCTTGGCCGTCACGGACCTCTCGTCGTCGTAGGTG 5871 || || | | |||||||| || || | | || |||||| || |||||||| Sbjct 1427520 AGTTTGTTATTCCTCACATATTTGCCTTTCTCGATGACTGACCTCGAATCATCGTAGGTA 1427461 Query 5872 ACGAGATCGTCGTTG------TGGTACACGTAGGGCGCTTGCGCCACTCCGTCGTAATTC 5925 || || || | || | | | ||||| || ||||| || ||| |||||| | Sbjct 1427460 ACAAGGTCTCCTGTGGAAGGATTGAAGACGTATGGAGCTTGGGCTACTTTGTCGTAGTGA 1427401 Query 5926 G-GGT-----------TGGGATACCGGTTCGTGATGTCTTTGTAGTCCACGACACCGTTT 5973 ||| ||| | | || | || || ||||||| || || |||| Sbjct 1427400 TAGGTCCACTGACCACTGGCAATTCCATTGGCAATCTCCCTGTAGTCGACCACTCCGTCC 1427341 Query 5974 TCCCAGGAACCCTTTACGGGACCCGTGGCAGTGCCTGTGAAGGGATTGTTGTTGGTGATG 6033 | ||| | ||| || || || || || ||||||||||| | | || || | Sbjct 1427340 TGCCAAGTACCTTTAACAGGGCCATCAGCTACTCCTGTGAAGGGGATATCGTCCTTGTAG 1427281 Query 6034 TTGTGGATTCCACGCCATCCCCTGCCGTACATGGCCACGCCCACCACCAATTTGTTTGGG 6093 | |||| |||| |||||| | |||||||| || || || || |||| || || || Sbjct 1427280 TCATGGACTCCAGTCCATCCACGACCGTACATAGCAACACCGACGACCAGCTTCTTGGGC 1427221 Query 6094 TTCACGCTCTGATTGAGCAGG--CGTTGGACGGCGAACGCGGTGGTGTACTTTTCGGTGG 6151 | ||| | |||| | || | | || | || | || ||||| | || ||| Sbjct 1427220 TGCACTCCCTGAGCCAAAAGATACCTAATAC--CAAAGTCAGTAGTGTAAGTCTCCTTGG 1427163 Query 6152 GGTTCCATGTGGGCGCGTACAGGGGCGTCTGCAGTCCCAGATCGGTGTTAGACCAGGCTC 6211 | ||||| || ||||| | | ||||| | || ||| | || |||||||||| Sbjct 1427162 GTTTCCACTCAGGAGCGTATAACGAGGTCTGGTGGCCAAGAGTGTCATTGGACCAGGCTC 1427103 Query 6212 CCTTGAAATCGTACGTCATGACGAAAATATGATCCAGATACTCCTGCACCGCACCGTATT 6271 ||||||| ||||| |||| ||||||||||| |||| || | ||| | | ||| | Sbjct 1427102 CCTTGAAGTCGTAGCTCATCACGAAAATATGGTCCATGTAGTTCTGGGCTTCCTTGTAGT 1427043 Query 6272 CTACAACGTTTATTTTGTCGTAGCCCCCGCTGATGGCGCTTGTGAGCAGATACTTGCGAC 6331 ||||| | || ||||| | || | |||||||| || ||| || || | Sbjct 1427042 TGACAACCTGAATCTTGTCCCACCCAGCACTGATGGCAGAAGTCAGCTCGTATTTCTTTC 1426983 Query 6332 CCGTGCGAGTCTCCAGACCGTCCAGCATGGACCTGAGGTCGCCCAAGAGCGCTTGATAGG 6391 | || || | |||||| |||| || || || || ||| | || Sbjct 1426982 CGGTCTCAGCGGATAACTCGTCCAACATGTGTCTAAGCTCCTTCATGAGTGTCACGTATA 1426923 Query 6392 TGACGCCGTCGACTGTGACGTTTCCTAAGGCAGGATTGGCTCCCTTGCCTCCGGGAAATT 6451 | | || || | ||| || | | |||| || |||||||| ||||| || || | Sbjct 1426922 TTTCACCATCTTTAG-GACCA--CCAAGGTCAGGGTTAGCTCCCTTACCTCCAGGGAACT 1426866 Query 6452 CCCAATCTATGTCCACGCCGTCGAAGAACTTCCAAGTTTCCAGAAATTCTTCGACGCTCT 6511 ||||||| || || ||||| |||||||| ||||| || | | ||| || | ||| Sbjct 1426865 CCCAATCAATATCAACGCCATCGAAGAATTTCCAGGTCTGTAAAAAGTCCTTGACTGAAC 1426806 Query 6512 CTACGAACACCTTTCTTTTAATCGTGTCGTTGAGCTGGTAAAAGGGATCGCTCAGCGTCC 6571 | ||||| | ||| |||| |||| | || | | |||||||| ||| |||| Sbjct 1426805 CAACGAAGCGGTCTCTCTTAACTTTGTCATCGAAGAAGAAGAAGGGATCAGCCAGGGTCC 1426746 Query 6572 ACCCACCGATCGAGGGCAGGATGGTCAGATGCGGATTG---TGTTTTCGTATGGCCATAA 6628 | ||||||| || || || || |||| | || ||| ||||| || ||| | Sbjct 1426745 AACCACCGACTGAAGGAAGAATCTTCAGGTCAGGTTTGGCCTGTTTCAACAT---CATCA 1426689 Query 6629 GCTGACCGAAATTACCCTTGTACATTTCCGAGTAGGCCTCGACGCCCTTCTGGGGTTTTT 6688 | ||||||||||| |||||||| || ||| | | ||||||||| || |||| Sbjct 1426688 GTTGACCGAAATTGCCCTTGTAAGGCTCATTCCAGGACGATAAGCCCTTCTGTGGCTTTT 1426629 Query 6689 GTAGTGCGCCCCATATATCGTGTATGGACACCTTGAAGTCGTCTCGTCCCTCGCACGATC 6748 | | || |||| |||||| ||||| || |||||||| || || || ||| || | Sbjct 1426628 GCAAAGCAGCCCAAGGATCGTGGATGGATACTTTGAAGTCTTCCCGACCGCTGCAGGAGC 1426569 Query 6749 GCTGCAGAGCTTCGAACGAGCCCGGCACCTGTTTCAGAGCGTCGTTGATACCATCCCCTC 6808 | ||||| |||| ||| ||| | | |||| | |||||| || ||||| || | Sbjct 1426568 GTTGCAGTGCTTGGAAACTACCCTCAATTTCCTTCAAACTGTCGTTAATGCCATCACCGC 1426509 Query 6809 CGCACATGGGCACGAATCCGTACAGCAGATGTGTGAGATTGGGAATGGGGATTCTGTCGG 6868 |||| || || | ||| ||||||| | || || || ||||||| ||| | | |||| Sbjct 1426508 CGCAAATCGGGATGAAGCCGTACAATAAGTGGGTCAGGTTGGGAACGGGAACTTTGTCTA 1426449 Query 6869 CGGGAAACTGTCTGTCGTAAACACCCCACTCCACGAAGTAAGCTCCGA 6916 |||| |||| || ||| || ||||| || |||||||| || |||| Sbjct 1426448 CGGGGAACTTTCGCGGGTACACGCCCCATTCTACGAAGTACGCACCGA 1426401 >seq36 Length=1647457 Score = 114 bits (126), Expect = 9e-21 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | ||||| | || | || || ||| ||| || || |||||||| Sbjct 937284 TTGCATTCCACCGCGGAGTCTGAGTACTAAATGCAGAGTGGACTCTTTCTGAATGTTGTA 937343 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | || ||| |||| || ||||| || ||||||||||| | ||||||||||| Sbjct 937344 ATCTGACAGAGTGCGGCCGTCCTCAAGCTGTTTTCCGGCAAAGATAAGTCGCTGCTGATC 937403 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || ||| | |||||||| ||| || || |||| || ||| | || ||||| | | Sbjct 937404 TGGAGGAATGCCTTCCTTATCCTGGAT-TTTAGCTTTAACATTCTCAATTGTGTCCGATG 937462 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||| |||| || || || || || || || ||||| || || |||||||| Sbjct 937463 GTTCCACTTCCAGTGTGATTGTTTTGCCAGTCAGCGTCTTGACAAAAATTTGCAT 937517 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | |||||||||||| || ||| || ||||||||||| || Sbjct 456057 CATACCACCACGCAGACGGAGCACCAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAGTC 455998 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || || ||||| || ||||| |||||||| |||||||| |||| Sbjct 455997 TGAAAGGGTGCGGCCATCCTCAAGCTGTTTGCCGGCGAAGATCAATCGCTGCTGGTCTGG 455938 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||| || || ||||| ||| | | ||| | ||||| | | ||| Sbjct 455937 GGGAATGCCTTCTTTGTCTTGGATCTT-TGCCTTTACATTCTCA--GTGTCAGATGGTTC 455881 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| |||| ||||| || ||||| ||||| || || |||||||| ||||| Sbjct 455880 CACTTCCAGTGTAATTGTTTTTCCAGTGAGAGTTTTAACGAAGATCTGCAT 455830 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||||||||| || |||||| ||||||||||| |||| ||| ||| | || || Sbjct 456264 CACCAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTC 456205 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||| || || || |||||||| |||||||| |||| || | ||||| || || Sbjct 456204 GAGCTGTTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTG 456145 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| | | ||| | |||||||| | | || || || | ||||| || | Sbjct 456144 GATCTT-TGCCTTTACATTCTCAATGGTGTCAGAAGGCTCAACTTCAAGAGTAATAGTTT 456086 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||||||| || ||||| ||||| Sbjct 456085 TGCCAGTAAGGGTCTTGACAAAGATCTGCAT 456055 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| |||||||| ||||||||||| | || ||| | || || Sbjct 455810 ACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATCCTCG 455751 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || ||||| |||||||| |||||||| |||| || | || ||||| || Sbjct 455750 AGCTGTTTGCCGGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 455691 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||| | | |||||| |||| ||||| || ||| Sbjct 455690 ATCTTAGCCTTTACATTCTCAATAGTGTCAGATGGTTCCACTTCCAGTGTAATAGTTTTT 455631 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| || || |||||||| ||||| Sbjct 455630 CCAGTGAGAGTTTTAACGAAGATCTGCAT 455602 Score = 109 bits (120), Expect = 4e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||||||||| ||||| |||| ||| || |||| || |||||||| ||||||||| Sbjct 935572 TCCTTTTGGATATTGTAGTCGGAGAGAGTACGGCCGTCCTCGAGCTGCTTACCGGCAAAG 935631 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | ||||||||||| | ||| | |||||||| ||| | | || || | || || Sbjct 935632 ATAAGTCGCTGCTGATCCGGAGGAATGCCTTCCTTGTCC-TGAATTTTGGCCTTAACATT 935690 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||| | | ||||| || | || ||||| || || || || ||||| || Sbjct 935691 CTCAATTGTGTCAGAAGGCTCCACTTCAAGTGTGATCGTTTTACCGGTCAGCGTCTTAAC 935750 Query 44326 GAAGATTTGCAT 44337 ||| |||||||| Sbjct 935751 GAATATTTGCAT 935762 Score = 105 bits (116), Expect = 5e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | | |||||||||||| || |||||| |||||||| ||||| Sbjct 455148 CATACCACCGCGCAGACGGAGCACCAGGTGAAGAGTTGACTCCTTCTGGATGTTATAATC 455089 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| |||| || | ||||| || |||||||||| ||||||||||||| Sbjct 455088 TGAGAGGGTGCGGCCGTCTTCTAATTGCTTTCCAGCAAAGATCAGTCGCTGCTGATCTGG 455029 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||||||| | | | | || |||| | |||| | || ||||| | | | Sbjct 455028 GGGAATACCTTCCTTAT-CTTGAATTTTAGCTTTGACGTTCTCAATAGTGTCTGACGGCT 454970 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | || || || || || || | ||| || ||||| || ||||| Sbjct 454969 CAACTTCGAGAGTGATGGTTTTACCAGTCAAGGTTTTTACGAAAATCTGCAT 454918 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| |||||||| ||||||||||| | || ||| | || || Sbjct 455582 ACCAAGTGCAGGGTGGATTCCTTTTGAATGTTGTAATCAGAAAGGGTGCGGCCATCCTCA 455523 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || |||||||||||||| |||||||| |||| || | ||||| || || Sbjct 455522 AGCTGTTTGCCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGG 455463 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | || ||| | || ||||| | | || ||||| | || || || || Sbjct 455462 ATCTT-TGCCTTAACATTCTCGATAGTGTCTGAAGGCTCAACCTCAAGGGTGATGGTTTT 455404 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||||||| || || ||||| ||||| Sbjct 455403 ACCTGTGAGGGTTTTGACAAAGATCTGCAT 455374 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 |||||||||||| || |||||| ||||||||||| |||| || || | || || Sbjct 455355 CACCAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTACGGCCATCCTC 455296 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||| || ||||| |||||||||||||| || |||| || | ||||| || || Sbjct 455295 AAGCTGTTTGCCGGCGAAGATCAAACGCTGTTGGTCTGGGGGAATGCCTTCTTTGTCTTG 455236 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | || | || ||||| | | || ||||| | || || || || Sbjct 455235 GATCTTGGCCTTTACATTTTCAATAGTGTCTGAAGGCTCAACCTCAAGGGTGATTGTTTT 455176 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||| || ||||| ||||| Sbjct 455175 GCCAGTAAGGGTCTTGACAAAGATCTGCAT 455146 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| ||| ||||| || |||||||| || | || |||| | || || Sbjct 937536 CACCAAGTGAAGTGTGGATTCCTTCTGAATGTTGTAGTCTGATAGAGTGCGCCCATCTTC 937595 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 | |||||| |||||||| || | |||||||||||||| ||| | ||||| || || Sbjct 937596 TAACTGCTTTCCGGCAAAAATGAGACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCTTG 937655 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || ||||| || | || ||||| | | || || |||| || || || || Sbjct 937656 GATTTTGGCCTTCACATTTTCAATAGTGTCTGAAGGCTCAACTTCCAAAGTGATAGTTTT 937715 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | ||||| |||||||| ||||| Sbjct 937716 CCCAGTTAAAGTCTTTACGAAGATCTGCAT 937745 >seq175 Length=629782 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || |||| ||| |||||||| ||||| || ||| |||||| ||||||||||| |||| Sbjct 292510 CCACCTCGCAGCCTCAACACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAT 292569 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAA 44211 || ||| | || |||||||| || ||||| |||||||| Sbjct 292570 AGCGTGCGGCCATCCTCCAGCTGTTTACCGGCGAAGATCAA 292610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359898830929407