Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manduca_20sexta_20[genbank_20GCA_5F000262585.1_202012-05-24] 20,871 sequences; 419,424,057 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq36 163 7e-35 seq158 159 8e-34 seq175 84.2 5e-11 >seq36 Length=1647457 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| |||||||| ||||| |||||||| ||||| || |||||| Sbjct 455377 CAGATCTTTGTCAAAACCCTCACAGGTAAAACCATCACCCTTGAGGTTGAGCCTTCAGAC 455436 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || |||||| || ||||||||||| || || || |||||||| Sbjct 455437 ACTATCGAGAATGTTAAGGCAAAGATCCAAGACAAAGAAGGCATTCCCCCAGACCAGCAG 455496 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| ||||| |||||||| || ||||| | || ||| | ||||| ||| | Sbjct 455497 CGATTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCCTTTCTGATTACAACATT 455556 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || ||||| |||| Sbjct 455557 CAAAAGGAATCCACCCTGCA-CTTG 455580 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||||||||| |||||||| || || || || |||||| || ||| Sbjct 455605 CAGATCTTCGTTAAAACTCTCACTGGAAAAACTATTACACTGGAAGTGGAACCATCTGAC 455664 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||| || ||||| || || || || || |||||||| Sbjct 455665 ACTATTGAGAATGTAAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAGCAG 455724 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||||||||| ||||||||||| ||||| | || ||| | ||||| ||| | Sbjct 455725 CGATTGATCTTCGCCGGCAAACAGCTCGAGGATGGCCGCACCCTTTCTGATTACAACATT 455784 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| ||||| || ||||| |||| Sbjct 455785 CAAAAGGAATCCACCCTGCA-CTTG 455808 Score = 150 bits (166), Expect = 4e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || ||||||||||| || || ||||| || ||| Sbjct 935759 CAAATATTCGTTAAGACGCTGACCGGTAAAACGATCACACTTGAAGTGGAGCCTTCTGAC 935700 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || || ||||||||||| ||||| || |||||||| ||||| Sbjct 935699 ACAATTGAGAATGTTAAGGCCAAAATTCAGGACAAGGAAGGCATTCCTCCGGATCAGCAG 935640 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| ||||| || |||||||| || || | ||||| |||| || || || Sbjct 935639 CGACTTATCTTTGCCGGTAAGCAGCTCGAGGACGGCCGTACTCTCTCCGACTACAATATC 935580 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| ||||| || ||||| Sbjct 935579 CAAAAGGAATCTACTTTGCAT 935559 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || || ||||| ||||| || || |||||| || ||| Sbjct 937514 CAAATTTTTGTCAAGACGCTGACTGGCAAAACAATCACACTGGAAGTGGAACCATCGGAC 937455 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || ||||| || ||||| || ||||| || ||||| Sbjct 937454 ACAATTGAGAATGTTAAAGCTAAAATCCAGGATAAGGAAGGCATTCCTCCAGATCAGCAG 937395 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| |||||||||||||| || || || | ||||| | ||||| ||| | Sbjct 937394 CGACTTATCTTTGCCGGAAAACAGCTTGAGGACGGCCGCACTCTGTCAGATTACAACATT 937335 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || ||||| || || |||||| | || | |||||| Sbjct 937334 CAGAAAGAGTCCACTCTGCATTTAGTACTCAGACTC 937299 Score = 149 bits (164), Expect = 2e-30 Identities = 157/206 (76%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||||||||| |||||||| || || || || |||||| || ||| Sbjct 455833 CAGATCTTCGTTAAAACTCTCACTGGAAAAACAATTACACTGGAAGTGGAACCATCTGAC 455892 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || |||||| || ||||||||||| || || || |||||||| Sbjct 455893 ACT---GAGAATGTAAAGGCAAAGATCCAAGACAAAGAAGGCATTCCCCCAGACCAGCAG 455949 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||||||||| |||||||| || ||||| | || ||| | || || ||| || Sbjct 455950 CGATTGATCTTCGCCGGCAAACAGCTTGAGGATGGCCGCACCCTTTCAGACTACAACATC 456009 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| ||||| || || || || Sbjct 456010 CAGAAAGAGTCAACTCTTCACCTGGT 456035 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| | || || ||||| ||||| ||||| || || |||||| Sbjct 454921 CAGATTTTCGTAAAAACCTTGACTGGTAAAACCATCACTCTCGAAGTTGAGCCGTCAGAC 454980 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||||||| || ||||| || || ||||| || || || || ||||| Sbjct 454981 ACTATTGAGAACGTCAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGATCAGCAG 455040 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || ||||| || | ||||| || | || || | ||||||||| || Sbjct 455041 CGACTGATCTTTGCTGGAAAGCAATTAGAAGACGGCCGCACCCTCTCAGATTATAACATC 455100 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || ||||| || || || || Sbjct 455101 CAGAAGGAGTCAACTCTTCACCTGGT 455126 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || ||||| |||||||| ||||| || |||||| Sbjct 455149 CAGATCTTTGTCAAGACCCTTACTGGCAAAACAATCACCCTTGAGGTTGAGCCTTCAGAC 455208 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| || ||||||||||| || || || ||||| || Sbjct 455209 ACTATTGAAAATGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCCCCAGACCAACAG 455268 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| |||||||| || ||||| | || ||| |||| || ||| || Sbjct 455269 CGTTTGATCTTCGCCGGCAAACAGCTTGAGGATGGCCGTACCCTTTCCGACTACAACATC 455328 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || ||||| || || || || Sbjct 455329 CAGAAGGAGTCAACTCTTCACCTGGT 455354 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || ||||| || || || || || || || ||| Sbjct 456058 CAGATCTTTGTCAAGACCCTTACTGGCAAAACTATTACTCTTGAAGTTGAGCCTTCTGAC 456117 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || |||||| || ||||||||||| || || || |||||||| Sbjct 456118 ACCATTGAGAATGTAAAGGCAAAGATCCAAGACAAAGAAGGCATTCCCCCAGACCAGCAG 456177 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | |||||||| || ||||||||||| ||||| | || || |||| || ||| || Sbjct 456178 CGATTGATCTTCGCTGGCAAACAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATC 456237 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 456238 CAGAAGGAGTCTACTCTTCACCTGGT 456263 Score = 111 bits (122), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| || ||| | || || ||||| ||||| | || || || Sbjct 937748 AAAATGC---AGATCTTCGTAAAGACTTTAACTGGGAAAACTATCACTTTGGAAGTTGAG 937692 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 |||||||| || || || || || || || || ||||||||||| || ||||| Sbjct 937691 CCTTCAGACACTATTGAAAATGTGAAGGCCAAAATCCAAGACAAAGAAGGCATTCCTCCA 937632 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || || || || |||||||| ||| | |||||||| | ||||| | || Sbjct 937631 GATCAGCAGCGTCTCATTTTTGCCGGAAAGCAGTTAGAAGATGGGCGCACTCTATCAGAC 937572 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| | || || ||||| ||||| || |||| Sbjct 937571 TACAACATTCAGAAGGAATCCACACTTCA-CTTG 937539 >seq158 Length=707457 Score = 159 bits (176), Expect = 8e-34 Identities = 159/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| || || || || || |||||||| |||||||| |||||| Sbjct 607080 CAGATATTCGTCAAAACCCTAACGGGGAAGACCATCACCCTTGAGGTGGAGGCTTCAGAC 607139 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| || || |||||||| |||||||||||||| || Sbjct 607140 ACCATCGAAAATGTGAAGGCTAAGATCCAAGATAAAGAAGGTATCCCTCCGGACCAACAG 607199 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||||||||| || ||| | |||||||| | ||||| | ||||| || || Sbjct 607200 CGACTCATCTTCGCCGGCAAGCAGTTGGAAGATGGCCGTACTCTGTCTGATTACAATATC 607259 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || |||||||| || || || |||| Sbjct 607260 CAGAAAGAATCCACTCTTCA-CTTG 607283 >seq175 Length=629782 Score = 84.2 bits (92), Expect = 5e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || ||||| || ||||| || ||| ||| Sbjct 293653 CAGATCTTCGTTAAGACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAGCCCTCGGAC 293594 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || |||||||| || ||| |||||||| || || || ||||||||||| || ||||| Sbjct 293593 ACTATCGAGAATGTGAAAGCCAAGATTCAAGATAAGGAGGGAATCCCTCCTGATCAGCA 293535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203409310615974