Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq317 197 1e-45 >seq317 Length=2337800 Score = 197 bits (218), Expect = 1e-45 Identities = 492/740 (66%), Gaps = 14/740 (2%) Strand=Plus/Minus Query 16679 TAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATG 16738 || |||| || |||||||| || || ||||||||||| | || || || || ||||| Sbjct 1453418 TATTCGCCGACACGTTTTTCAAAGAAATTAGTTTTGCCTTGTAATGAAATGTTTTCCATA 1453359 Query 16739 AAATCAAAAGGATTAGTAGC--TGAA-AATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795 || | ||| ||||| | | |||| ||| || || |||| |||| | || Sbjct 1453358 AATTTAAATGGATTCTTGACCATGAATAATGGTTCGCAG---CCCAATTCGCTCAACAAA 1453302 Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 | ||| || |||||||| || || ||||| | || ||||| || | | Sbjct 1453301 CGATCGGCAACAAATTCAATGTACGTACACATATCAGCACAATTCATGCCCAACATTGAA 1453242 Query 16856 ACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTA 16915 || || | || |||| |||||| | || || ||||||||| ||||||| | Sbjct 1453241 ACTGGCAATGCAACCGTTAAAAATTCCTTTTCAATGCGAACCGCTTCAGCAATAATATTG 1453182 Query 16916 GCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCG 16975 || ||||| | || ||| | ||| || || ||||||||| | |||||| ||||| Sbjct 1453181 CGTACACGTTCTTGTGATGGTTTTTGTACAACATATTTAAACATTAAACATGCAAAATCA 1453122 Query 16976 CAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTT 17035 ||||| | ||||| || | || | ||| || |||||||| || |||||||| Sbjct 1453121 CAATGCATGCCCTCATCACGTGAAATTAATTCATTGGAAAATGTTAAACCGGGCATTAGA 1453062 Query 17036 CCTCGTTTCTTTAACCAAAATATCGCGGCGAA-CGACCCAGAAAAGAATATACCCTCGAC 17094 || ||||| || |||||||| || | || || | ||| |||| || || || || || Sbjct 1453061 CCACGTTTTTTCAACCAAAAAATAGATGCAAAGCTACCGCTAAAAAAA-ATCCCTTCAAC 1453003 Query 17095 GGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTG 17154 | |||||| || | | ||||| | | || || |||| | | |||||||| Sbjct 1453002 AGCTGCAAATGCAACAACACGTTCACCAAATGTGGCCGTTTTGCTGCCAATCCATTGTAA 1452943 Query 17155 CACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAAT---TT 17211 |||| ||||| || | || | || || |||||| ||||| ||||| || || Sbjct 1452942 TGCCCAATCGGCCTTCTTTTTAACACATGGCAACGTTTCGATGGCATTAAACAAAAAATT 1452883 Query 17212 CTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTG 17271 || ||| | ||| | |||| | || | ||| ||||||||||| ||||| Sbjct 1452882 ACGTTCTTCATC---GTCACGTGCATACTGTTGTATTAATAGACTGTACATTTCAGAGTG 1452826 Query 17272 TATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 | || || ||||| || ||||| || |||||| | || ||||| | || |||||| || Sbjct 1452825 CACATTTTCAATGGCCATTTGAAAGCCATAAAAGAAACGTGCTTCAGTTACTTGAACCTC 1452766 Query 17332 CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 | || ||||| ||| |||||| || |||||||| ||| || || ||||| || Sbjct 1452765 TTGGCTAAAACGTTCAACTAAATTTTCATTGACGATGCCATCGGATGCAGCAAAAAAGGC 1452706 Query 17392 CAATATATGCTTAATGAAAT 17411 ||| | |||||| ||||||| Sbjct 1452705 CAACACATGCTTTATGAAAT 1452686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517387263393000