Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq317 203 3e-47 >seq317 Length=2337800 Score = 203 bits (224), Expect = 3e-47 Identities = 486/728 (67%), Gaps = 8/728 (1%) Strand=Plus/Minus Query 15926 ACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAG 15985 || |||||||| ||||| |||||||| || | ||| || || ||||||||||| | ||| Sbjct 1453409 ACACGTTTTTCAAAGAAATTAGTTTTGCCTTGTAATGAAATGTTTTCCATAAATTTAAAT 1453350 Query 15986 GGATTAGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTA 16043 ||||| | | |||| | || | | |||| ||| | | || | ||| || | Sbjct 1453349 GGATTCTTGACCATGAATAATGGTTCGC--AGCCCAATTCGCTCAACAAACGATCGGCAA 1453292 Query 16044 CAAATTCTATATATTGACACAT-TAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGA 16102 ||||||| || || |||||| | || | ||||| || || | | | || || | Sbjct 1453291 CAAATTCAATGTACGTACACATATCAG-CACAATTCATGCCCAACATTGAAACTGGCAAT 1453233 Query 16103 GCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGT 16162 || |||||||||| | ||| || ||||||||| ||| |||| | | ||| Sbjct 1453232 GCAACCGTTAAAAATTCCTTTTCAATGCGAACCGCTTCAGCAATAATATTGCGTACACGT 1453173 Query 16163 GTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGT 16222 || || ||| | || | | ||||||||||| ||| || || || ||||| | Sbjct 1453172 TCTTGTGATGGTTTTTGTACAACATATTTAAACATTAAACATGCAAAATCACAATGCATG 1453113 Query 16223 CCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTC 16282 || || || | || | ||| |||||||| ||||| || |||||| || ||||| Sbjct 1453112 CCCTCATCACGTGAAATTAATTCATTGGAAAATGTTAAACCGGGCATTAGACCACGTTTT 1453053 Query 16283 TTTAACCAGAATATCGCAGCAAA-TGACCCCGAAAAGAATATACCCTCAACAGATGCAAA 16341 || ||||| || || | ||||| ||| | |||| || || || ||||||| |||||| Sbjct 1453052 TTCAACCAAAAAATAGATGCAAAGCTACCGCTAAAA-AAAATCCCTTCAACAGCTGCAAA 1452994 Query 16342 AGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTC 16401 || | | ||||| | | || || ||| | | |||||||| | |||| || Sbjct 1452993 TGCAACAACACGTTCACCAAATGTGGCCGTTTTGCTGCCAATCCATTGTAATGCCCAATC 1452934 Query 16402 GGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTG 16461 ||| || | ||| | ||| || |||||| ||||| |||||||| | ||| | Sbjct 1452933 GGCCTTCTTTTTAACACATGGCAACGTTTCGATGGCATTAAACAAAAAATTACGTTCTTC 1452874 Query 16462 AATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTAT 16521 | || | |||| | || | || |||||||||||| ||||| | || || || Sbjct 1452873 ATCGTCACGTGCATACTGTTGTATTAATAGACTGTACATTTCAGAGTGCACATTTTCAAT 1452814 Query 16522 GGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCG 16581 ||| || ||||| ||||| ||| | || || || | || ||| || || | ||| || Sbjct 1452813 GGCCATTTGAAAGCCATAAAAGAAACGTGCTTCAGTTACTTGAACCTCTTGGCTAAAACG 1452754 Query 16582 TTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTT 16641 ||| | | || ||||| ||||| || || |||||||||||| ||||| | ||||| Sbjct 1452753 TTCAACTAAATTTTCATTGACGATGCCATCGGATGCAGCAAAAAAGGCCAACACATGCTT 1452694 Query 16642 AATGAAAT 16649 ||||||| Sbjct 1452693 TATGAAAT 1452686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511257939157000