Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq10355 192 1e-44 >seq10355 Length=764 Score = 192 bits (212), Expect = 1e-44 Identities = 318/455 (70%), Gaps = 3/455 (1%) Strand=Plus/Minus Query 17066 GCCCGGTTATGACTTTACGCAGAAAAATTCCGAGCTGCAGGCTGTGCTCGGGGTCGATAA 17125 ||| || || ||||| ||| | || ||| ||||||||| |||||| | ||||| Sbjct 479 GCCGGGATACGACTTCGCGCTGGCTAACTCCACGCTGCAGGCAACGCTCGGCCTTGATAA 420 Query 17126 GCAGTCGCCAGAAATGCAGGCGTTACGCAAACAGGCGCGCCACGTCGGCGACAATACTGC 17185 ||| |||| | ||| | | |||| ||||||||| | |||| || || || || Sbjct 419 AGGCTCGGCAGAGTTTCAGTCCCTGCGCACGCAGGCGCGCAGCATCGGTGATAACACAGC 360 Query 17186 AGCCTCTGCAGATGATGCAGCAAGCGCGCAAATCATCATTGCGAAAAGCGGCGGTGATGC 17245 || || || | ||||| || ||||| ||||| || || ||| |||||| | Sbjct 359 CGCATCGGCCAACGATGCCGCGCAGGCGCAGATCATTATCGCTAAATCGGGCGGTAGCGT 300 Query 17246 AGCTGCCATTCAGGCG-CGACGCCGAGTCACGCTGAATATGGCGCTGTCAAACCGGCGCA 17304 | | ||| ||||| | ||||| ||| |||||| ||||| ||||| ||||| |||| Sbjct 299 GGACGACATCAAGGCGGCAACGCC-AGTGACGCTGGATATGTCGCTGGCAAACAATCGCA 241 Query 17305 CGATGGAGGAAAACGCAGCGCTGCTGACCGGGATGAAATCAGCGTTTCAGCTTTCAAACG 17364 ||||||| |||| ||| ||||||||| | | ||| || ||| || | ||| Sbjct 240 CGATGGAAGAAAGCGCCTCGCTGCTGATGAGTACCAAAAACGCCTTTGGCCTGGCTAACA 181 Query 17365 ACAAGATTGCGCACATTGGCGACGTTCTCTCGATGACGATGAACAAAACCGCCGCCGATT 17424 | || | || || | |||||||| || ||| ||||||| |||||||| | | Sbjct 180 GCGAGGTGGCCCATCTCGGCGACGTGATCAGCGCAACGCTGAACAAGACCGCCGCAAACT 121 Query 17425 TTGACGGACTGAGCGACGCGCTGACCTATGCCGCACCGGTGGCAAAAAATGCCGGGGTGA 17484 ||||||| |||||||| ||||||||||| |||||| ||||| |||| || || || | Sbjct 120 TTGACGGCCTGAGCGATGCGCTGACCTACATCGCACCAGTGGC-GAAAACGCGGGCGTCA 62 Query 17485 GCATCGAGCAAACCGCCGCAATGGTCGGTGCACTG 17519 || ||||||| ||| |||||||| | || |||||| Sbjct 61 GCGTCGAGCAGACCACCGCAATGATTGGCGCACTG 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97846753490700