Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq33 111 1e-19 >seq33 Length=1400293 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 101687 TCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACT 101746 ||||| |||| | ||| | |||||||| || || |||||||| || || || || Sbjct 741588 TCAATATGATTGAGATAAACATGAGCATCGCCAATTGTATGGATGAAATCGCCTGGTTTC 741647 Query 101747 AGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGC 101806 | ||| ||||||||||||||| | || || || |||||| ||||| || ||||| Sbjct 741648 AAGCCAGTAACATGAGCAATCATGTATGTCAATGAAGCATAGCTTGCAATATTGAATGGT 741707 Query 101807 ACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAG 101866 || ||||| |||||||| ||||| | ||||||| |||||| || || | || ||| Sbjct 741708 ACACCTAAACCCATATCGGCTGACCGCTGATACAATTGACATGATAGTTCACCGTCAGCA 741767 Query 101867 ACATAAAATTG 101877 || || ||||| Sbjct 741768 ACGTAGAATTG 741778 Score = 107 bits (118), Expect = 1e-18 Identities = 280/421 (67%), Gaps = 7/421 (2%) Strand=Plus/Plus Query 101888 TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATC 101947 ||||| || || | ||||||| || || || |||||||||||| | ||| | || Sbjct 741887 TGACATGGAGGTAGAGCCATTTTCGGGATATCAACAACATTCCAAGCGCTCATGATAATT 741946 Query 101948 CTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCT 102007 | | ||| |||| || || ||| || || | | || ||||| |||| ||| Sbjct 741947 CGACGATCATTAGGATTGGTACGAATACGATTGATAACTTCATTCAATTGATCAATGCCT 742006 Query 102008 TCTCCTTTATAATCGCGCCCAACACCTTTA-TATTCTGCTCCGAAATGCCTCCACTGAAA 102066 | || |||||||| | ||| ||| ||||| || || ||||| | ||| ||||| Sbjct 742007 TGGCCGGTATAATCGT-CATGACATGTTTTGTATTCAGCGCCAAAATGTCGCCATTGAAA 742065 Query 102067 TCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAA 102126 ||||| || ||||| | ||| || || || | |||| ||||||| |||||| | ||| Sbjct 742066 ACCATAAACCGGTCCCAAATCGCCCTCTTCACGATCATGAAAACCATTTTTATCGAGAAA 742125 Query 102127 TGATCTAGATCCATTCGCATCCCAAATGTGCA-CGCCAGCTGCTGATAGCTCTTTGCTGT 102185 | | | | ||| ||||||||||||| | | | || | |||||| | Sbjct 742126 TTCACGTGTGCTATTGCCATCCCAAATGTGAATATTCTTGTCTTGTAATTCCTTTGC-AT 742184 Query 102186 CAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCT 102245 ||| ||| |||| |||||||||| |||||| | || | | ||||||||||| | Sbjct 742185 TTGTACTGCCTTTGATGAACCACAACAATTCTTCCAGGACGGCACGCCAAAATACTCGTT 742244 Query 102246 TAGTAGTTAAAAGTGGAAA---TTCATTTTCTAAACTAAACCTAGACTGTGTTCCAAAAA 102302 |||| ||||| | ||||| |||||| |||| | || || ||| | ||||| | Sbjct 742245 TAGTTGTTAACAACGGAAAGATATCATTTCGTAAATTGAATCTCATCTGAGCACCAAATA 742304 Query 102303 T 102303 | Sbjct 742305 T 742305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361143442718225