Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq317 178 1e-39 seq193 95.1 1e-14 seq28 89.7 5e-13 >seq317 Length=2337800 Score = 178 bits (196), Expect = 1e-39 Identities = 378/556 (68%), Gaps = 15/556 (3%) Strand=Plus/Plus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| || || || || ||||| || || || || ||| || | ||||| | | | | Sbjct 1452596 AGGCAGAAGCATCATTTTGGACAGTTGAAGAAGTTGACTTGACAAAGGATATGGATCATT 1452655 Query 116715 GGGAGCGCT----TGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTC 116770 || | | | ||||||| | || || ||||||| ||||| ||| |||||||||| Sbjct 1452656 GGAA-CAATAAAATGAACGAAGATGAACGTAATTTCATAAAGCATGTGTTGGCCTTTTTT 1452714 Query 116771 GCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAG 116830 || || ||| ||||||||||| || ||| | || || ||||| || ||||| || Sbjct 1452715 GCTGCATCCGATGGCATCGTCAATGAAAATTTAGTTGAACGTTTTAGCCAAGAGGTTCAA 1452774 Query 116831 GTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAA 116890 || | || || || | ||| || |||||||| || ||||| || || |||||||| ||| Sbjct 1452775 GTAACTGAAGCACGTTTCTTTTATGGCTTTCAAATGGCCATTGAAAATGTGCACTCTGAA 1452834 Query 116891 ATGT--ATTCGACCCTCAT-CGACACGTACGTGCGCTCTTCGGAGGAGAAGCT--CCGTT 116945 |||| | || | | || | ||| ||| ||| | || | |||| | || Sbjct 1452835 ATGTACAGTCTA--TTAATACAACA-GTA--TGCACGTGACGATGAAGAACGTAATTTTT 1452889 Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || |||||||| ||| |||| || || ||| |||||||||| ||||| | | | Sbjct 1452890 TGTTTAATGCCATCGAAACGTTGCCATGTGTTAAAAAGAAGGCCGATTGGGCATTACAAT 1452949 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 |||| | | ||| | |||| | || || || || | || || || || || || || | Sbjct 1452950 GGATTGGCAGCAAAACGGCCACATTTGGTGAACGTGTTGTTGCATTTGCAGCTGTTGAAG 1453009 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 | | || ||| || || || || | || |||||| | || ||||| || || |||| Sbjct 1453010 GGATTTTTTTTAGCGGTAGCTTTGCATCTATTTTTTGGTTGAAAAAACGTGGTCTAATGC 1453069 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 |||| | || || ||| || | || || | || ||||| ||||||| || |||| Sbjct 1453070 CCGGTTTAACATTTTCCAATGAATTAATTTCACGTGATGAGGGCATGCATTGTGATTTTG 1453129 Query 117186 CCTGTTTGCTGTTCAA 117201 | ||||| |||| || Sbjct 1453130 CATGTTTAATGTTTAA 1453145 >seq193 Length=1219868 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| | || |||||||||||||| | || || ||| | | Sbjct 521229 ATGCAAATTTTTGTCAAAACATTGACTGGCAAAACCATCACTTTGGAAGTTGAACCATCA 521170 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | |||| || || | ||||||||||| || || | || || Sbjct 521169 GACACCATCGAAAACGTT-AAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCA 521111 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | || | || || ||||| |||| || | || || | | ||||||||| Sbjct 521110 ACAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTACAA 521051 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| || || || | || ||||| | || ||||| Sbjct 521050 CATTCAAAAAGAATCAACTTTGCATTTGGTATTGCG 521015 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| | || ||||| |||||||| | || || ||| | | Sbjct 521457 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACTTTGGAAGTTGAACCATCA 521398 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| | |||| || || | |||||||| || || || | || || Sbjct 521397 GACACCATCGAAAACGTT-AAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCA 521339 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | || | ||| || ||||| |||| |||| || || | | ||||||||| Sbjct 521338 ACAGCGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGTCGTACATTGAGCGACTACAA 521279 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| |||||||| | || ||||| | || ||||| Sbjct 521278 CATTCAGAAGGAATCAACATTGCATTTGGTCTTGCG 521243 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || || ||||||||||| | || || ||| | | Sbjct 520287 ATGCAAATTTTCGTCAAAACATTGACCGGAAAAACCATCACTTTGGAGGTTGAACCATCA 520228 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | ||||| |||||| ||||| | |||||||| || || || | || || Sbjct 520227 GACACCATCGAAAACG-TCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCGCCAGATCA 520169 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | || | || ||||| || |||| || | || || | | |||||| || Sbjct 520168 ACAGCGTTTGATTTTTGCCGGCAAGCAATTGGAAGATGGCCGTACATTGAGCGACTATAA 520109 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| ||||| | || ||||| Sbjct 520108 TATCCAAAAGGAATCAACATTGCAT 520084 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| | || || ||||||||||| | || |||||| | | Sbjct 521913 ATGCAAATTTTTGTGAAAACATTGACCGGAAAAACCATCACTTTGGAGGTCGAACCATCA 521854 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || || | |||||||| || || || | ||||| Sbjct 521853 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 521794 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | || || ||||| |||| || | || || | | |||||| ||| Sbjct 521793 CAGCGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTATAAC 521734 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || || || | || ||||| | || ||||| Sbjct 521733 ATTCAAAAAGAATCAACTTTGCATTTGGTATTGCG 521699 >seq28 Length=2173237 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40685 GAAAA--ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 40742 ||||| ||||| || ||||| ||||| |||||||| || || ||||| |||| ||||| Sbjct 1269772 GAAAACCATGCAGATTTTCGTTAAAACCCTCACGGGTAAGACTATCACTCTCGAAGTCGA 1269831 Query 40743 AGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGC 40802 | | | |||| | ||| |||||| ||||| | ||||| || || || || | Sbjct 1269832 ACCGTCAGACACTATCGAAAATGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACC 1269891 Query 40803 GGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 40862 || || ||||| | |||| || || ||||| |||| || | || || | ||| Sbjct 1269892 AGATCAACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGTCGTACATTGTCCGA 1269951 Query 40863 CTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||||||| || ||||| | || || ||| Sbjct 1269952 CTACAACATTCAAAAGGAATCAACACTCCAT 1269982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515061575126000