Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq33 131 1e-25 >seq33 Length=1400293 Score = 131 bits (144), Expect = 1e-25 Identities = 272/402 (68%), Gaps = 5/402 (1%) Strand=Plus/Plus Query 97252 TGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATT 97311 ||||| || || | |||||||| || | ||| | ||||||||||| | ||| | ||| Sbjct 741887 TGACATGGAGGTAGAGCCATTTTCGGGATATCAACAACATTCCAAGCGCTCATGATAATT 741946 Query 97312 CTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCT 97371 | | ||| | || || || | || ||| || | | || |||||||||| |||| Sbjct 741947 CGACGATCATTAGGATTGGTACGAATACGATTGATAACTTCATTCAATTGATCAATGCCT 742006 Query 97372 TCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAAT 97431 | || ||||| || | | || ||||| || |||||||| | |||||| || Sbjct 742007 TGGCCGGTATAATCGTCATGACATGTTTTGTATTCAGCGCCAAAATGTCGCCATTGAAAA 742066 Query 97432 CCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAG 97491 |||||||| ||||| | || || ||||| | |||| |||||| ||||| | | | Sbjct 742067 CCATAAACCGGTCCCAAATCGCCCTCTTCACGATCATGAAAACCATTTTTATCGAGAAAT 742126 Query 97492 GACCTAGATCCATTTGCATCCCAAATGTGCACA-CCAGATGCTGCAAGCTCTTTGCTGTC 97550 | | | ||| ||||||||||||| | | | | || || |||||| | Sbjct 742127 TCACGTGTGCTATTGCCATCCCAAATGTGAATATTCTTGTCTTGTAATTCCTTTGC-ATT 742185 Query 97551 AGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTT 97610 ||| ||| |||| ||||||||||||||||||| || | | ||||||||||| || Sbjct 742186 TGTACTGCCTTTGATGAACCACAACAATTCTTCCAGGACGGCACGCCAAAATACTCGTTT 742245 Query 97611 AGTTGTTAAGAGAGGAAA---ATCCTTTTCTAAGCTGTATCT 97649 ||||||||| | ||||| ||| ||| ||| || |||| Sbjct 742246 AGTTGTTAACAACGGAAAGATATCATTTCGTAAATTGAATCT 742287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346680558125750