Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq314 168 1e-36 seq193 150 3e-31 seq33 132 7e-26 seq6000 102 1e-16 >seq314 Length=2668924 Score = 168 bits (186), Expect = 1e-36 Identities = 283/408 (69%), Gaps = 7/408 (2%) Strand=Plus/Plus Query 202862 ATACAT-CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATN 202920 |||||| |||||||||||||||||||| || ||||||||| ||| | |||||| |||| Sbjct 825335 ATACATACCAACATATCCATTTGGATCGCGACCATCTATAGCATAATAATCATTCAAATA 825394 Query 202921 NNNNNNNNNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCA 202980 | || | ||| ||||||| |||||||| ||||| ||||| ||||| Sbjct 825395 TATGGCGATACTGAGAGCCTTTTCCGGTGATTCGGTCCATTCCAATATCTTTTTTGCCCA 825454 Query 202981 ATACATTCTTAAATATCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATT 203040 |||||| | | | | || |||||||| || | || ||| ||| | |||| | ||| Sbjct 825455 ATACATGCGAAGAAAACCGTGCATTTTTCCTTCTTTATTCAGTTGAATCTGTGCCGAATT 825514 Query 203041 CCATAAATTGTCATGAGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCT 203100 ||| | || ||||| ||| || | | ||||| | |||| || | |||| Sbjct 825515 CCACAGATCATCATGGGTTTTGGCTCCAGCCAATTGATCCACCGTATAGATCCATGTTCT 825574 Query 203101 AGTATCATTTTTATGTTCATTTAGTGTTTTTATTGCCCAATTATTAGCACCATTTATATT 203160 |||| || |||| | |||| ||||| |||||| || | || | ||| || Sbjct 825575 TTTATCTTTGCTATGCGCTTTTAATGTTTCCTGTGCCCAGG-ATGAACAACCTTTTAATG 825633 Query 203161 A-TCGTAATTTTCATTATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTT 203219 | || ||||||||||||||| ||||||||||||| ||| ||| |||||||| |||| Sbjct 825634 AATCATAATTTTCATTATAAAAACAAAAATTATCCGATAATTCACGTCGAATAATCGCTT 825693 Query 203220 CTTCACAAAAAACTTCTACCGA--TTTAGGATATAATTTTTTATATTT 203265 |||| | ||| | || ||||| || | || || ||||||||||| Sbjct 825694 CTTCGCGAAAGCCATCAACCGAATCTTTGTATTTA--TTTTTATATTT 825739 >seq193 Length=1219868 Score = 150 bits (166), Expect = 3e-31 Identities = 176/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||| | || |||||||| || ||| | || ||||| || Sbjct 521229 ATGCAAATTTTTGTCAAAACATTGACTGGCAAAACCATCACTTTGGAAGTTGAACCATCA 521170 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | || || || ||||| ||||| ||||| ||||| |||||| Sbjct 521169 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCAA 521110 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | |||||||| || |||||||| || ||| |||| || || || || || Sbjct 521109 CAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTACAAC 521050 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||||||||||||||||||||||||| || ||| | || |||||||| ||| || Sbjct 521049 ATTCAAAAAGAATCAACTTTGCATTTGGTATTGCGTCTTCGTGGTGGTATGCAAATTT 520992 Score = 150 bits (166), Expect = 3e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || |||||||| ||| | || ||| | || || ||||| || ||| | ||| | ||| || Sbjct 521916 ACCATGCAAATTTTTGTGAAAACATTGACCGGAAAAACCATCACTTTGGAGGTCGAACCA 521857 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || ||| ||| | || || || ||||| |||||||| || ||||| || Sbjct 521856 TCAGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGAC 521797 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 ||||| | | |||||||| || |||||||| || ||| |||| || || || ||| Sbjct 521796 CAACAGCGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTAT 521737 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||||||||||||||||||||||||||| || ||| | || |||||||| Sbjct 521736 AACATTCAAAAAGAATCAACTTTGCATTTGGTATTGCGTCTTCGTGGTGGTAT 521684 Score = 145 bits (160), Expect = 1e-29 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||| | || || ||||| || || | || ||||| || Sbjct 520792 ATGCAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAACCATCA 520733 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || ||||| ||||||||||| ||||| |||||| Sbjct 520732 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 520673 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || || ||||| ||||| || |||| || ||| || ||||| Sbjct 520672 CAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGCACTTTATCCGACTATAAC 520613 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||||||||||||| |||||||||||| | ||| | || |||||||| ||| || Sbjct 520612 ATTCAAAAAGAATCAACATTGCATTTGGTTCTCCGTCTTCGTGGTGGTATGCAAATTT 520555 Score = 141 bits (156), Expect = 1e-28 Identities = 119/146 (82%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || ||||| ||||||||||| ||||| ||||||||| | | |||||||| || ||| Sbjct 520936 AAGATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGATTGATTTTTGCTGGTAAA 520877 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| || ||| |||| || || || ||||| |||||||||||||||||||||||| Sbjct 520876 CAATTGGAAGATGGTCGTACTTTGAGCGACTATAACATTCAAAAAGAATCAACTTTGCAT 520817 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||| | || |||||||| Sbjct 520816 TTGGTATTGCGTCTTCGTGGTGGTAT 520791 Score = 141 bits (156), Expect = 1e-28 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||| | || ||||| || || || | || ||||| || Sbjct 521685 ATGCAAATCTTTGTCAAAACATTGACTGGCAAGACCATCACATTGGAAGTTGAACCATCA 521626 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || || || ||||| ||||||||||| ||||| |||||| Sbjct 521625 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 521566 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || || ||||| ||||| || |||| || || || ||||| Sbjct 521565 CAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGTACTTTGAGCGACTATAAC 521506 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||||||||||||||| |||||||||||| | ||| | || |||||||| ||| || Sbjct 521505 ATTCAAAAAGAATCAACATTGCATTTGGTTCTCCGTCTTCGTGGTGGTATGCAAATTT 521448 Score = 134 bits (148), Expect = 2e-26 Identities = 173/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || ||| | || || ||||| || ||| | ||| ||||| || Sbjct 520287 ATGCAAATTTTCGTCAAAACATTGACCGGAAAAACCATCACTTTGGAGGTTGAACCATCA 520228 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | || ||||| ||||| ||||||||||| || || |||||| Sbjct 520227 GACACCATCGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCGCCAGATCAA 520168 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | |||||||| || || ||||| || ||| | || ||||| || |||||| Sbjct 520167 CAGCGTTTGATTTTTGCCGGCAAGCAATTGGAAGATGGCCGTACATTGAGCGACTATAAT 520108 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATTC 124777 || ||||| |||||||| |||||||||||| | ||| | || || || | | ||||||| Sbjct 520107 ATCCAAAAGGAATCAACATTGCATTTGGTTCTTCGTCTTCGTGGCGGAAATTAAAATTC 520049 Score = 134 bits (148), Expect = 2e-26 Identities = 122/154 (79%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || || ||||| ||||| ||||| ||||| ||||||||| | | |||||||| || ||| Sbjct 520431 AAGATCCAAGACAAAGAGGGTATTCCACCAGATCAACAACGATTGATTTTTGCTGGTAAA 520372 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| || ||| |||| || || || || || |||||||||||||||||||||||| Sbjct 520371 CAATTGGAAGATGGTCGTACTTTGAGCGACTACAACATTCAAAAAGAATCAACTTTGCAT 520312 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || ||| | || |||||||| ||| || Sbjct 520311 TTGGTATTGCGTCTTCGTGGTGGTATGCAAATTT 520278 Score = 127 bits (140), Expect = 3e-24 Identities = 171/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||| | || ||||| || || ||| | || ||||| || Sbjct 521457 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACTTTGGAAGTTGAACCATCA 521398 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || || | || || || ||||| ||||||||||| ||||| |||||| Sbjct 521397 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 521338 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || || |||||||| || || |||| ||||| || || || Sbjct 521337 CAGCGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGTCGTACATTGAGCGACTACAAC 521278 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || |||||||| ||||||||||| || ||| | || |||||||| ||| || Sbjct 521277 ATTCAGAAGGAATCAACATTGCATTTGGTCTTGCGTCTTCGTGGTGGTATGCAAATTT 521220 >seq33 Length=1400293 Score = 132 bits (146), Expect = 7e-26 Identities = 136/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 205363 TGtttttttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATA 205422 |||| |||||| | ||||||||| | ||| | ||| |||| ||||| |||| || Sbjct 741573 TGTTGCTTTAATGGTTCAATATGATTGAGATAAACATGAGCATCGCCAATTGTATGGATG 741632 Query 205423 AATTCATATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTA 205482 || || |||||| || ||| | ||| |||||||| || |||||| || ||| || Sbjct 741633 AAATCGCCTGGTTTCAAGCCAGTAACATGAGCAATCATGTATGTCAATGAAGCATAGCTT 741692 Query 205483 GCAACATTAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATG 205540 |||| ||| ||||||||||||||||||||||| ||||| | ||||||| |||||||| Sbjct 741693 GCAATATTGAATGGTACACCTAAACCCATATCGGCTGACCGCTGATACAATTGACATG 741750 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 205732 TATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTT 205791 |||| ||| |||||||| |||||||||||||||||||| || || ||||| || |||| Sbjct 742037 TATTCAGCGCCAAAATGTCGCCATTGAAAACCATAAACCGGTCCCAAATCGCCCTCTTCA 742096 Query 205792 CTATCATTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatgg 205851 | ||||| ||||||| ||| | | | ||| || | ||| |||||||||| || Sbjct 742097 CGATCATGAAAACCATTTTTATCGAGAAATTCACGTGTGCTATTGCCATCCCAAATGTGA 742156 Query 205852 attcctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCT 205911 || || | || || |||| ||| || || || ||||| || |||||| Sbjct 742157 ATATTCTTGTCTTGTAATTCCTTTGCATTTGTACTGCCTTTGATGAACCACAACAATTCT 742216 Query 205912 TCAACAATTCCTCTCCAAAACATTGATTTTGTTGTAAATAATGGAAATGAATCAT 205966 || | | | | |||||| | | ||| ||||| || || ||||| ||||| Sbjct 742217 TCCAGGACGGCACGCCAAAATACTCGTTTAGTTGTTAACAACGGAAAGATATCAT 742271 >seq6000 Length=1279 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 124638 GAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGT 124697 |||||||||||||| |||||||| | | |||||||| || || ||||| || ||| | Sbjct 1279 GAAGGTATACCACCAGATCAACAGCGTTTGATTTTTGCCGGCAAGCAATTGGAAGATGGC 1220 Query 124698 CGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTA 124757 || ||||| || |||||||| ||||| |||||||| ||||| ||||| || ||| | Sbjct 1219 CGTACATTGAGCGACTATAATATCCAAAAGGAATCAACATTGCACTTGGTCTTGCGTCTT 1160 Query 124758 CGAGGTGGTATTAAAAATT 124776 || || || | |||||| Sbjct 1159 CGTGGCGGAAAATAAAATT 1141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755224877680000