Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq193 114 1e-20 seq28 109 5e-19 seq29 100 2e-16 >seq193 Length=1219868 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| ||||| || | || || ||||||||||||||||| |||| Sbjct 521001 TACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGC 521060 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| ||| || ||| || | ||||| ||||| | || | || || ||||| || | Sbjct 521061 TCAAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTG 521120 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || ||||| |||||| || || ||||| | ||||| |||||| | || | || Sbjct 521121 GAATACCCTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGT-TCA 521179 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | |||||||| |||| ||||| |||||||| ||||| Sbjct 521180 ACTTCCAAAGTGATGGTTTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521229 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| ||||| || | || || |||||||||||||| || |||| Sbjct 521685 TACCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGC 521744 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| ||| || ||| || | ||||| || || | || | |||||| || || || | Sbjct 521745 TCAAAGTACGACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTG 521804 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || |||||| || || || || | ||| | |||||| | || | ||| Sbjct 521805 GAATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGT-TCG 521863 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||||| | || | ||||| ||||||| ||||| |||||||| ||||||| Sbjct 521864 ACCTCCAAAGTGATGGTTTTTCCGGTCAATGTTTTCACAAAAATTTGCATGG 521915 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| ||||| || | ||| || || || ||||||||||| |||| Sbjct 521229 TACCACCACGAAGACGCAAGACCAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCGC 521288 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| || || || || | ||||| || ||| | || | |||||| ||||| || | Sbjct 521289 TCAATGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTG 521348 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || |||||| || || ||||| | ||||| |||||| | || | || Sbjct 521349 GAATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGT-TCA 521407 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | || ||||| |||| ||||| |||||||| ||||| Sbjct 521408 ACTTCCAAAGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521457 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||| || |||||||||||||| || ||||||| ||| || || || Sbjct 521477 ACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCGTCTTCT 521536 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | |||||| || ||| | || | |||||| ||||| || || || || || |||||| Sbjct 521537 AACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 521596 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | ||| | |||||| | || | || || || | || | || || Sbjct 521597 ATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGT-TCAACTTCCAATGTGATGGTCTT 521655 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| ||||| ||||| || ||||| Sbjct 521656 GCCAGTCAATGTTTTGACAAAGATTTGCAT 521685 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | ||| || |||||||||||||| || ||| | |||||| || || Sbjct 520584 ACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGGATAAAGTGCGACCGTCTTCT 520643 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | |||||| || ||| | || | |||||| ||||| || || || || || |||||| Sbjct 520644 AACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 520703 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | ||| | |||||| | || | || || || | || | ||||| Sbjct 520704 ATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGT-TCAACTTCCAATGTGATGGTTTT 520762 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||||| ||||| || ||||| Sbjct 520763 TCCAGTCAATGTTTTGACAAAGATTTGCAT 520792 >seq28 Length=2173237 Score = 109 bits (120), Expect = 5e-19 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| |||| ||| || || |||||||||||||| ||| || || || ||| || Sbjct 1269987 ACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCGGACAATGTACGACCATCTTCC 1269928 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||||| ||||| |||| | ||| || ||||| || || || || ||||||||| Sbjct 1269927 AATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGG 1269868 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | ||||| ||||| | ||||| |||| || | || || Sbjct 1269867 ATTTTGGCCTTGACATTTTCGATAGTGTCTGACGGTTCGACTTCGAGAGTGATAGTCTTA 1269808 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTCTATT 118751 || || || ||||| || ||||||||||||| | ||||||| Sbjct 1269807 CCCGTGAGGGTTTTAACGAAAATCTGCATGG--TTTTCTATT 1269768 >seq29 Length=2096867 Score = 100 bits (110), Expect = 2e-16 Identities = 290/438 (66%), Gaps = 14/438 (3%) Strand=Plus/Minus Query 132903 GCGGCGGGTTTTGTGCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAA 132962 ||||| ||| ||||||||||||||||| || ||||| || | ||| || ||| Sbjct 938171 GCGGCTGGTCGAGTGCGCAAATAATACATTCCTGTTTTGAGACCGGCTTTCCATGCATAA 938112 Query 132963 AAGTGTATGCTCGACACCACCGAGTAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGA 133022 || || || | || | ||| || |||||||| ||| ||||| | ||||||| Sbjct 938111 AAATGAATCGAAGTCATTTTTGCGTATGTTGGTTCGGCCACATGCAAATTGAACGATTGA 938052 Query 133023 CTCTGATCTATGAAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATC 133082 || ||||| ||||| | | | || || || ||||| || || | ||| | ||| Sbjct 938051 CTTTGATCGATGAACGCACCCCGATCAGCAGCCATATTGATGGTTG--TTTTAACAGATA 937994 Query 133083 T--CCCATGCCGTCTTGAAGAGATTCTTGACATGCT-GTGGTATTTCGTCA-ATGTTCTG 133138 | |||| | || ||| | | || | || | || |||| ||| ||| || || || Sbjct 937993 TTTCCCAAACGGTTTTGTATAAAT-CGCGAATTTCTTGTGGAATT-CGTGTGATATTTTG 937936 Query 133139 CACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAATTCCGGAGTGT---AAATGTCGAG 133195 | || || | ||||| | || | ||| || || | || | || |||| Sbjct 937935 AATTGAACCATAATCGGCAATGATTTCGTTTTTCATGTC---ATCGTCCCACATATCGAT 937879 Query 133196 ATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCG 133255 ||| | | |||||| |||| || |||||||||||||| || |||| ||||| || Sbjct 937878 TTCGGTCAAATCTTTGATCAGATGATGATTGACCACTTGAAATTCACCGGAAAGAACACG 937819 Query 133256 TCTGAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGC 133315 | ||| | ||| || ||| | |||||||| ||||| ||||||||||| || || || Sbjct 937818 GCGATTATAAATATTTGATGTGTAAGGTTCGAATGATTCATTGTTGCCGAGAATTTGAGC 937759 Query 133316 CGTCGTCGCCGTGGGCAT 133333 ||| | || || ||||| Sbjct 937758 CGTACTAGCTGTCGGCAT 937741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433700993136700