Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq314 114 2e-20 seq350 95.1 2e-14 >seq314 Length=2668924 Score = 114 bits (126), Expect = 2e-20 Identities = 239/346 (69%), Gaps = 9/346 (3%) Strand=Plus/Minus Query 189293 GAACTATCGGATAATTTTTGTTACTATAACAAACATTATGAT--AGTATCCAGTCTACTC 189350 ||| |||||||||||||||||| ||||| || |||||||| | || || | || Sbjct 825676 GAATTATCGGATAATTTTTGTTTTTATAATGAAAATTATGATTCATTAAAAGGT-TGTTC 825618 Query 189351 ATTCATGGGC-CAGAAAAACATTAGAAGATCACATTAATGATCCTAGAAAGTATATATAT 189409 || | ||||| ||| ||| ||||| ||| || | || ||| |||| | || ||| Sbjct 825617 ATCC-TGGGCACAGGAAA-CATTAAAAGCGCATAGCAAAGATAAAAGAACATGGATCTAT 825560 Query 189410 TCCATTAAACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATG 189469 | | | ||| | | ||| |||| |||||| ||| ||||| || |||| || Sbjct 825559 ACGGTGGATCAATTGGCTGGAGCCAAAACCCATGATGATCTGTGGAATTCGGCACAGATT 825500 Query 189470 CAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATA 189529 || || | ||||||||||||||| ||||| | || ||||||||||| || |||||| Sbjct 825499 CAACTGAATAAAGAAGGAAAAATGCACGGTTTTCTTCGCATGTATTGGGCAAAAAAGATA 825440 Query 189530 CTTGAATGGACTAGAACACCTGAAGACGCTTTGAGTTATAG-TATCTATTTGAACAACAA 189588 | |||||||| | |||| ||| | ||| | || ||| | || |||||||| | | Sbjct 825439 TTGGAATGGACCGAATCACCGGAAAAGGCTCTCAG-TATCGCCATATATTTGAATGATTA 825381 Query 189589 GTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT-TGTAT 189633 || | |||| || ||||| || ||||| || ||| ||||| Sbjct 825380 TTATGCTATAGATGGTCGCGATCCAAATGGATATGTTGGTATGTAT 825335 >seq350 Length=253124 Score = 95.1 bits (104), Expect = 2e-14 Identities = 217/327 (66%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 135605 AAGACGAGTGGACTACGTGGaaaaaaaTACCCGATCCTGTTTTGCATATAGAACTTAGGA 135664 ||||||| |||| | |||| ||| ||||||||| | ||||| || | | | Sbjct 41101 AAGACGAATGGAAAATGTGGCTCAAACGTGACGATCCTGTGCTACATATTGATTTGGGTA 41042 Query 135665 GATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAATAGCTA 135724 |||||| ||| | | | || || || ||| |||||||| || || ||||| || | Sbjct 41041 AATGGGCCGATTTGATGTTAATTGCACCATTAGATGCAAATACATTGGCCAAAATGGCCA 40982 Query 135725 ATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGATACAAACAAACCAC 135784 || || || ||||||||||| || || | |||||||| || | || | Sbjct 40981 CCGGCATTTGTGATAATTTACTATTGTGTACGACACGAGCCTGGAATCTGGAAAAGGGTC 40922 Query 135785 TCATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTATTACAGAAAAACATA 135844 | | || ||||| |||||||||| | |||||| ||||||| || ||| || | || | Sbjct 40921 TATTCTTTTGTCCGTCAATGAATACACGAATGTGGAAACATCCAATAACAAAACAGCAAA 40862 Query 135845 TAGATACGTTAAAATATATGGGTTTCATAGAAATAGAATGCATAGaaaaaaaaCTAGCAT 135904 | |||| | ||| | ||| ||| ||||| ||||||| |||||| || | Sbjct 40861 TCGATATTCTTAAAAGTTGGGGCCACATTGAAATTAAATGCATTTCCAAAAAATTAATGT 40802 Query 135905 GTGGAGACGTAGGAAATGGTGCTATGG 135931 | || ||| | || ||||||| |||| Sbjct 40801 GCGGTGACATTGGCTATGGTGCAATGG 40775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922914359479000