Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq191 113 5e-20 seq7018 100 3e-16 seq17930 82.4 9e-11 >seq191 Length=3545575 Score = 113 bits (124), Expect = 5e-20 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| |||||| | ||||||||||||||||||||| |||||||||||||||| |||| Sbjct 2949995 AAAAATATTCTCCCCAGCAGGGAATCGAACCCTGGTCGTCCGCGTGACAGGCGGAAATAC 2949936 Query 60117 TCACCACTATACTACCGAGGAT 60138 | ||||||||||||| |||||| Sbjct 2949935 TAACCACTATACTACTGAGGAT 2949914 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| | ||||||||||||||||||||| |||||||||||||||| ||||| ||||||| Sbjct 2949446 CTCCCCAGCAGGGAATCGAACCCTGGTCGTCCGCGTGACAGGCGGAAATACTAACCACTA 2949505 Query 60126 TACTACCGAGGAT 60138 |||||| |||||| Sbjct 2949506 TACTACTGAGGAT 2949518 >seq7018 Length=3748 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| | ||||||||||||||||||||| |||||||||||||||| ||||| ||||||| Sbjct 3324 CTCCCCAGCAGGGAATCGAACCCTGGTCGTCCGCGTGACAGGCGGAAATACTAACCACTA 3383 Query 60126 TACTACCGAGGAT 60138 |||||| |||||| Sbjct 3384 TACTACTGAGGAT 3396 >seq17930 Length=2109152 Score = 82.4 bits (90), Expect = 9e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| |||||||| ||||| |||||||| ||||||||||| | || || || | Sbjct 1835523 ACGCAATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCGGACAATGTACGGCC 1835464 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | || ||||| || || || | || || ||||| | || | || || || Sbjct 1835463 ATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTGGAATGCCTTCTTT 1835404 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| |||||| |||| | | | |||||| | || || || | ||||| Sbjct 1835403 GTCTTGGATTTTAGCCTTGACATTTTCGATTGTGTCGGATGGCTCGACTTCAAGTGTGAT 1835344 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTT 43187 || ||||| ||||| || || || || |||||||| ||| Sbjct 1835343 AGTCTTGCCGGTTAGAGTTTTAACGAAAATTTGCATCTTT 1835304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571642659553000