Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq350 125 1e-23 seq193 107 3e-18 seq17930 104 3e-17 >seq350 Length=253124 Score = 125 bits (138), Expect = 1e-23 Identities = 229/335 (68%), Gaps = 3/335 (1%) Strand=Plus/Plus Query 209089 ACACGGATTTCATGTTCATGAATATGGTGATGTGAGTAATGGTTGTACATCAGCAGGAGA 209148 ||| ||||||||| | ||||||| |||||| | |||||||||||||| || || Sbjct 73826 ACATGGATTTCATATCCATGAATTTGGTGACAATACAAATGGTTGTACATCGGCCGGTCC 73885 Query 209149 ACATTTTAATCCATATAATAGACAACATGGAGATATTAGTGATAAAATACATCGTCATGT 209208 ||||||||||||| || | | | ||||| | || | | | |||||||||| Sbjct 73886 ACATTTTAATCCAACCAACAAAGAGCATGGTGCACCCGATGCTGATA---ATCGTCATGT 73942 Query 209209 TGGTGATTTTGGTAATGTGTATGCAGACGAAAATGGCGTTGCTAATATTGATTTTCACGA 209268 ||||||||| || ||||| | || | | |||||| |||||||| ||| || | ||| Sbjct 73943 TGGTGATTTGGGAAATGTTGAAGCCAATGCAAATGGTGTTGCTAAAATTAATATCAGCGA 74002 Query 209269 TGATATTATATCATTGTGTGGAACAAATAATATAATAGGAAGAACATTAGTAGTTCATGA 209328 | | || |||||| ||| |||||| ||| | ||| | || | || ||||||| Sbjct 74003 TTCGTTGATTTCATTGAATGGGCCAAATAGTATTCTTGGACGTACGGTTGTTGTTCATGC 74062 Query 209329 TTCGCCTGATGATTTAGGAAAAACTGATCACCCTTTGAGTAAAACAAGTGGTAATTCTGG 209388 | ||||||||| || || || ||||| ||||| | || ||| |||| Sbjct 74063 TGATGTTGATGATTTGGGTTTGGGTGGCCATGAATTGAGCAAAACTACCGGAAATGCTGG 74122 Query 209389 CGGAAGATTAGGTTGTGGTATTATTGGTATTGCAA 209423 || | | ||||| ||| | ||||||||||||| Sbjct 74123 CGCTCGCATTGGTTGCGGTGTCATTGGTATTGCAA 74157 >seq193 Length=1219868 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||||||||||| ||||| |||||||| || ||||| || Sbjct 520794 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTC 520853 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || |||||||| |||||||||||||||| ||| ||||| || ||| Sbjct 520854 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGA 520913 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 520914 ATACCTTCTTTGTCTTG 520930 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||||||||||| ||||| |||||||| || || || || Sbjct 520289 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTC 520348 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || |||||||| |||||||||||||||| ||| ||||| || ||| Sbjct 520349 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGA 520408 Query 146171 ATTCCTTCTTTATCTTG 146187 || || ||||| ||||| Sbjct 520409 ATACCCTCTTTGTCTTG 520425 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||||||||||| ||||| |||||||| || || || || Sbjct 521003 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTC 521062 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || |||||||| |||||||||||||||| ||| ||||| || ||| Sbjct 521063 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGA 521122 Query 146171 ATTCCTTCTTTATCTTG 146187 || || ||||| ||||| Sbjct 521123 ATACCCTCTTTGTCTTG 521139 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | ||||||||||| ||||| |||||||| || ||||| || Sbjct 521687 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTC 521746 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || |||||||| || ||||||||||| | || || || || ||| Sbjct 521747 AAAGTACGACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGGA 521806 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| ||||| Sbjct 521807 ATTCCTTCTTTGTCTTG 521823 >seq17930 Length=2109152 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | |||||||||||||| || ||||| || ||||| ||||| || Sbjct 1835534 CCACCACGAAGACGCAATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCGGAC 1835475 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || ||| || |||||||| || ||||||||||| | ||| || || || ||| Sbjct 1835474 AATGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTGGA 1835415 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 1835414 ATGCCTTCTTTGTCTTG 1835398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743298927392000