Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq317 291 8e-74 >seq317 Length=2337800 Score = 291 bits (322), Expect = 8e-74 Identities = 571/837 (68%), Gaps = 29/837 (3%) Strand=Plus/Minus Query 15949 ATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCAT 16008 |||||| | || | |||||||||||||| ||||| |||| ||||||||| |||||||| Sbjct 1453419 ATATTCGCCGACACGTTTTTCAAAGAAATTAGTTTTGCCTTGTAATGAAATGTTTTCCAT 1453360 Query 16009 AAAATCAAAAGGATTTTT-----TGAACAATAGTATTTATCGCATCCCAATTCCAACAAT 16063 ||| | ||| ||||| || |||| ||| || ||||| |||||||| ||| Sbjct 1453359 AAATTTAAATGGATTCTTGACCATGAATAATGGT-----TCGCAGCCCAATTCGCTCAAC 1453305 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 || | ||| || |||||||| || ||| ||| | |||| ||||| || | | | Sbjct 1453304 AAACGATCGGCAACAAATTCAATGTACGTACACATATCAGCACAATTCATGCCCAACATT 1453245 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183 ||| || | ||| | |||||||| | ||||| || |||||||||| || ||| Sbjct 1453244 GAAACTGGCAATGCAACCGTTAAAAATTCCTTTTCAATGCGAACCGCTTCAGCAATAATA 1453185 Query 16184 TCTCTTACTACACTATT-TAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAA 16242 | | ||| || | || | | || | || | | ||||||||||| ||| ||||| Sbjct 1453184 TTGCGTAC-ACGTTCTTGTGATGGTTTTTGTACAACATATTTAAACATTAAACATGCAAA 1453126 Query 16243 ATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCAT 16302 ||||||||||| || || || | ||||| || || |||||||| | ||| ||||| Sbjct 1453125 ATCACAATGCATGCCCTCATCACGTGAAATTAATTCATTGGAAAATGTTAAACCGGGCAT 1453066 Query 16303 TAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTC 16362 ||| || |||||||| | |||||| |||| ||||| ||| ||| || || ||||| Sbjct 1453065 TAGACCACGTTTTTTCAACCAAAAAATAGATGCAAAGCTACCGCTAAAAAAAATCCCTTC 1453006 Query 16363 AACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccattt 16422 ||| || ||||||||||| | || ||||| | || |||| || | ||||||| Sbjct 1453005 AACAGCTGCAAATGCAACAACACGTTCACCAAATGTGGCCGTTTTGCTGCCAATCCATTG 1452946 Query 16423 tttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATA 16482 | ||||||| || || | ||||||||| || | || || |||||||| ||| | Sbjct 1452945 TAATGCCCAATCGGCCTTCTTTTTAACACATGGCAACGTTTCGATGGCATTAAACAAAAA 1452886 Query 16483 AtttttttCTTTGCTATC-TAAAAT--ATAAGTATCTATTAGTAAACTATACATTTCTGA 16539 ||| ||||| ||| | | | ||| | ||||| || ||| |||||||| || Sbjct 1452885 ATTACGTTCTT---CATCGTCACGTGCATACTGTTGTATTAATAGACTGTACATTTCAGA 1452829 Query 16540 ATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTAC 16599 || | ||| || || || || ||||| ||||||||| | | ||||| | || ||| || Sbjct 1452828 GTGCACATTTTCAATGGCCATTTGAAAGCCATAAAAGAAACGTGCTTCAGTTACTTGAAC 1452769 Query 16600 TTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAA 16659 || | ||| | ||| |||| ||||| || || || |||||| || |||||||| Sbjct 1452768 CTCTTGGCTAAAACGTTCAACTAAATTTTCATTGACGATGCCATCGGATGCAGCAAAAAA 1452709 Query 16660 CGCAAGTATGTGTTTAATAAAAtt------tttttCGTT-ATCTGAAAGTTTTAACCAGT 16712 || | | || || || ||||| | |||||| || | | ||| ||| | Sbjct 1452708 GGCCAACACATGCTTTATGAAATTACGTTCATCTTCGTTCATTTTATTGTT----CCAAT 1452653 Query 16713 CAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCT 16769 | | ||| |||| || || || ||||| || |||||||| || || | |||| Sbjct 1452652 GATCCATATCCTTTGTCAAGTCAACTTCTTCAACTGTCCAAAATGATGCTTCTGCCT 1452596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462370500235000