Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq317 253 2e-62 >seq317 Length=2337800 Score = 253 bits (280), Expect = 2e-62 Identities = 554/817 (68%), Gaps = 17/817 (2%) Strand=Plus/Minus Query 13918 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13977 |||||| | || | |||||||||||| |||||||| |||| | ||| || |||||||| Sbjct 1453419 ATATTCGCCGACACGTTTTTCAAAGAAATTAGTTTTGCCTTGTAATGAAATGTTTTCCAT 1453360 Query 13978 AAAATCAAATGGATTTGTTGAC-ATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 14036 ||| | ||||||||| ||||| || || | | || || || | ||| | || | Sbjct 1453359 AAATTTAAATGGATTC-TTGACCATGAATAATGGTTCGCAGCCCAATTCGCTCAACAAAC 1453301 Query 14037 TATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 14096 ||| |||| || ||||| || | |||| | |||||||||| || | | | | Sbjct 1453300 GATCGGCAACAAATTCAATGTACGTACACATATCAGCACAATTCATGCCCAACATTGAAA 1453241 Query 14097 CAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT-C 14155 | || | | | ||||||||||| ||||| || || || || |||||| | | Sbjct 1453240 CTGGCAATGCAACCGTTAAAAATTCCTTTTCAATGCGAACCGCTTCAGCAATAATATTGC 1453181 Query 14156 GTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCA 14215 ||| | ||| | || || | | | || |||||| |||||||| ||||||||| Sbjct 1453180 GTAC-ACGTTCTTGTGATGGTTTTTGTACAACATATTTAAACATTAAACATGCAAAATCA 1453122 Query 14216 CAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAAT 14275 ||||| | ||||||||| | ||| | ||| || ||||||||||| || ||||| | Sbjct 1453121 CAATGCATGCCCTCATCACGTGAAATTAATTCATTGGAAAATGTTAAACCGGGCATTAGA 1453062 Query 14276 CCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACT 14335 || |||||||| |||||||| || | || || ||| ||| || || || ||||| Sbjct 1453061 CCACGTTTTTTCAACCAAAAAATAGATGCAAAGCTACCGCTAAAAAAAATCCCTTCAACA 1453002 Query 14336 GCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTA 14395 || ||||| || | | ||||| ||||| | || ||||| | ||||||| | Sbjct 1453001 GCTGCAAATGCAACAACACGTTCACCAAATGTGGCCGTTTTGCTGCCAATCCATTGTAAT 1452942 Query 14396 GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTT-- 14453 ||||| || | || ||||||| | | || ||||| || |||||||| ||| | Sbjct 1452941 GCCCAATCGGCCTTCTTTTTAACACATGGCAACGTTTCGATGGCATTAAACAAAAAATTA 1452882 Query 14454 CCTTCTCTTTAGT-ACTTGAAA--TGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 14510 | |||| | || || || | ||| ||||| |||| || ||||||||||||| Sbjct 1452881 CGTTCTTCATCGTCACGTGCATACTGT-TGTATTAATAGA----CTGTACATTTCAGAGT 1452827 Query 14511 GTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT 14570 | | ||||| || || || ||||| |||||||| | | ||||| | ||| |||| Sbjct 1452826 GCACATTTTCAATGGCCATTTGAAAGCCATAAAAGAAACGTGCTTCAGTTACTTGAACCT 1452767 Query 14571 CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATG 14630 || | ||| | ||| | ||||||||||| || || ||||| || |||||||| | Sbjct 1452766 CTTGGCTAAAACGTTCAACTAAATTTTCATTGACGATGCCATCGGATGCAGCAAAAAAGG 1452707 Query 14631 CCAATATGT-TTTTAATAAAGTA--TTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTA 14687 |||| | | |||| ||| || || ||||| || | || ||||||| | | Sbjct 1452706 CCAACACATGCTTTATGAAATTACGTTCATCTTCGTTCATTTTATTGTTCCAATGATCCA 1452647 Query 14688 AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 |||||| | | || ||||| |||||||||||||| Sbjct 1452646 TATCCTTTGTCAAGTCAACTTCTTCAACTGTCCAAAA 1452610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482198032393000