Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq28 114 1e-20 seq193 109 4e-19 seq17930 102 6e-17 >seq28 Length=2173237 Score = 114 bits (126), Expect = 1e-20 Identities = 169/238 (71%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 18088 CTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGT 18147 ||||||| | || || || || | || |||| || ||||||||||| |||||||||| Sbjct 1270015 CTTTTTGGCA-CCACCACGAAGACGGAGAACCAAATGGAGTGTTGATTCCTTTTGAATGT 1269957 Query 18148 TGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTT 18207 ||||||||| || ||| || ||||||||||||||| || ||| |||| | | ||||| Sbjct 1269956 TGTAGTCGGACAATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTT 1269897 Query 18208 GATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCAC 18267 |||| || | |||||||| || |||| |||||| | | | | |||||| Sbjct 1269896 GATCTGGTGGAATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTTTCGATAGTGTCTG 1269837 Query 18268 CGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||| ||| | ||||| | || || || | ||||| || ||||| ||||| Sbjct 1269836 ACGGTTCGACTTCGAGAGTGATAGTCTTACCCGTGAGGGTTTTAACGAAAATCTGCAT 1269779 >seq193 Length=1219868 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| || | ||||||||||||||||||||||||||| || || || |||||| Sbjct 521020 TACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTACGACCATCTTC 521079 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 ||||||||| || ||| | || | || ||||||||| || | || || || || Sbjct 521080 CAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCCTCTTTGTCTTG 521139 Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 || | ||| || | | | | ||||| || || ||| | |||||| |||| Sbjct 521140 GATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGATGGTTTT 521199 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| ||||||||||| |||||||||||||| Sbjct 521200 GCCAGTCAATGTTTTGACAAAAATTTGCAT 521229 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| || | |||||||||||||||||||| |||||| || || || |||||| Sbjct 521704 TACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCATCTTC 521763 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 ||||||||| || ||| | || | | ||||| || || | ||||| || || Sbjct 521764 CAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTGTCTTG 521823 Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 || | |||||| | | ||| ||||| || ||| || | |||||| |||| Sbjct 521824 GATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACCTCCAAAGTGATGGTTTT 521883 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||||||| |||||||||||||| Sbjct 521884 TCCGGTCAATGTTTTCACAAAAATTTGCAT 521913 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 18090 TTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTG 18149 |||| | ||| || || || | ||| |||| || | ||||||||| ||||| || || Sbjct 520052 TTTTAATTTCCGCCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTA 520111 Query 18150 TAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGA 18209 |||||| || ||| | |||||||||||| ||||| ||| | || | | |||||| Sbjct 520112 TAGTCGCTCAATGTACGGCCATCTTCCAATTGCTTGCCGGCAAAAATCAAACGCTGTTGA 520171 Query 18210 TCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCG 18269 || || | ||||| || || |||| |||||| | | | | ||||| Sbjct 520172 TCTGGCGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGAT 520231 Query 18270 GGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || | |||||| |||| |||||||||||||| || ||||||||||| Sbjct 520232 GGTTCAACCTCCAAAGTGATGGTTTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 520287 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || | ||||||||||||||||||||| ||||||| | || || ||| Sbjct 520581 AGAACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGGATAAAGTGCGACCGTCT 520640 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || || ||||| || || | || | | |||||||| || | ||||| || || Sbjct 520641 TCTAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCT 520700 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | ||| ||||| || || ||| | |||||| || Sbjct 520701 TGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTT 520760 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || ||||||||||| ||||| |||||||| Sbjct 520761 TTTCCAGTCAATGTTTTGACAAAGATTTGCAT 520792 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || | ||||||||||||||||||||| |||||| || || || ||| Sbjct 521474 AGAACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCGTCT 521533 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || || ||||| || || | || | | |||||||| || | ||||| || || Sbjct 521534 TCTAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCT 521593 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | ||| ||||| || || ||| | |||||| | Sbjct 521594 TGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTC 521653 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||||||||| ||||| |||||||| Sbjct 521654 TTGCCAGTCAATGTTTTGACAAAGATTTGCAT 521685 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| || | ||||||||||||||||||||||||||| || || || |||||| Sbjct 520306 TACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTACGACCATCTTC 520365 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 ||||||||| || ||| | || | || ||||||||| Sbjct 520366 CAATTGTTTACCAGCAAAAATCAATCGTTGTTGATC 520401 >seq17930 Length=2109152 Score = 102 bits (112), Expect = 6e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| || | ||||||||| ||||| || ||||| |||| || ||| | |||||| Sbjct 1835517 TACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCGGACAATGTACGGCCATCTTC 1835458 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 ||||||||| || ||| | || | | |||||| || || | |||||| || || Sbjct 1835457 CAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCTTG 1835398 Query 18236 AATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| |||||| | | | | ||||| |||||| ||||| ||||| | || Sbjct 1835397 GATTTTAGCCTTGACATTTTCGATTGTGTCGGATGGCTCGACTTCAAGTGTGATAGTCTT 1835338 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||||| | ||||| || ||||||||||| ||| Sbjct 1835337 GCCGGTTAGAGTTTTAACGAAAATTTGCATCTTT 1835304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379230845833875