Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq33 134 3e-26 seq317 120 6e-22 seq6116 86.0 1e-11 >seq33 Length=1400293 Score = 134 bits (148), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 35265 TGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGA--A 35322 |||||||| | | ||||||||||| |||| |||| | || || ||||| ||||| | Sbjct 742220 TGGAAGAATTGTTGTGGTTCATCAAAGGCAGTACAAATGCAAAGGAATTA--CAAGACAA 742163 Query 35323 GAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATA 35382 ||| || ||||| ||| | | ||| | | || |||||| | || | | || || | Sbjct 742162 GAATATTCACATTTGGGATGGCAATAGCACACGTGAATTTCTCGATAAAAATGGTTTTCA 742103 Query 35383 CGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGC 35442 ||| | | |||||| ||||||||||| || || || || |||||||| |||||||| || Sbjct 742102 TGATCGTGAAGAGGGCGATTTGGGACCGGTTTATGGTTTTCAATGGCGACATTTTGGCGC 742043 Query 35443 TGAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTG 35494 |||||| | || ||| | ||||||||| || | || |||||||||||| Sbjct 742042 TGAATACAAAACATGTCATGACGATTATACCGGCCAAGGCATTGATCAATTG 741991 >seq317 Length=2337800 Score = 120 bits (132), Expect = 6e-22 Identities = 263/386 (68%), Gaps = 16/386 (4%) Strand=Plus/Plus Query 101855 AAGAAGAAGGAGCAGTGGGCTATTA-ATTGGATGCAAAGCAATAACG-----ATTTGGCG 101908 || ||||||| | ||||| |||| | ||||| ||||| |||| |||||| | Sbjct 1452922 AAAAAGAAGGCCGATTGGGC-ATTACAATGGATTGGCAGCAA-AACGGCCACATTTGGTG 1452979 Query 101909 GAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCC 101968 ||| ||||||| ||||| || |||||||| || || ||||| ||| || ||||| Sbjct 1452980 -AACGTGTTGTTGCATTTGCAGCTGTTGAAGGGATTTTTTTTAGCGGTAGCTTTGCATCT 1453038 Query 101969 ATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATT 102028 ||||| ||| | || || | ||| | |||| ||| | || | |||||||| || ||| Sbjct 1453039 ATTTTTTGGTTGAAAAAACGTGGTCTAATGCCCGGTTTAACATTTTCCAATGAATTAATT 1453098 Query 102029 TCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTT 102088 || | || || || | ||| | || |||||||| | |||| ||| | | |||| Sbjct 1453099 TCACGTGATGAGGGCATGCATTGTGATTTTGCATGTTTAATGTTTAAATATG---TTGTA 1453155 Query 102089 GATACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAA 102148 | | |||||| |||| | | | | ||| | ||||||| || || |||||| | Sbjct 1453156 CAAAAACCATCACAAGAACGTGTACGCAATATTATTGCTGAAGCGGTTCGCATTGAAAAG 1453215 Query 102149 GAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGAT--GA 102206 |||||| | || ||| | |||| ||| | | |||| ||||| || | |||| | Sbjct 1453216 GAATTTTTAACGGTTGCATTGCCAGTTTCAATGTTGGGCATGAATTGT--GCTGATATGT 1453273 Query 102207 GCCAGTACATTGAATTTGTGGCAGAT 102232 | ||||||||||||||| || ||| Sbjct 1453274 GTACGTACATTGAATTTGTTGCCGAT 1453299 >seq6116 Length=1078 Score = 86.0 bits (94), Expect = 1e-11 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 93553 TCTCTAATCACATATTCGTTCACCACTTGGAATGATCCTGAAAGTACATTACGATTATAC 93612 ||| |||||| || | || |||||||| ||| || || | ||| |||||| || Sbjct 240 TCTTTAATCAAATGATGATTGACCACTTGAAATTCACCGGATAAAACACGACGATTGTAA 299 Query 93613 ATGTTGGACGTTAAAGGCTCAAAGGATTCAGAGTTGCCCAGGATCTGTGCAGTGGATGCA 93672 ||||| || || | |||||||| ||||| ||| || ||||| || || ||| || Sbjct 300 ATGTTTGATGTGTACGGCTCAAATGATTCGTTGTTACCAAGGATTTGAGCCGTGCTGGCG 359 Query 93673 GTAGGCATGGGAGCAACAAACATTGAATTGTGAACACCAT 93712 ||||||||||| |||| | || |||||| | ||||||| Sbjct 360 GTAGGCATGGGTGCAAGTAGCAATGAATTTCGGACACCAT 399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989273680373625