Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq6116 161 1e-34 seq17930 122 9e-23 seq317 114 1e-20 seq193 114 1e-20 seq28 89.7 5e-13 >seq6116 Length=1078 Score = 161 bits (178), Expect = 1e-34 Identities = 478/726 (66%), Gaps = 17/726 (2%) Strand=Plus/Plus Query 153072 TTGACAACTTGAAATTCGCCCGACAATACACGTC--TCAAAAACAAATTACTGTGAAACG 153129 ||||| ||||||||||| || || || ||||| | | ||| | | |||| | || Sbjct 258 TTGACCACTTGAAATTCACCGGATAAAACACGACGATTGTAAATGTTTGA-TGTGTA-CG 315 Query 153130 GTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCA 153189 | ||||| || ||||||||| || ||||| || || |||| || |||||| || | Sbjct 316 GCTCAAATGATTCGTTGTTACCAAGGATTTGAGCCGTGCTGGCGGTAGGCATGGGTGCAA 375 Query 153190 CAAGCAACGAATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAGTCCC 153249 ||||| ||||| || | || |||| || ||| ||||||| | ||| | || Sbjct 376 GTAGCAATGAATTTCGGACACCATGTTGGGCGATTTTCCCTTTCAATTCAGTCCAATTCC 435 Query 153250 ATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGC 153309 ||| ||| ||| | ||||||| ||| ||||| | || |||| ||| || Sbjct 436 ATAGATCAGTTGGTGTTTTGTTCCACATATCATATTGTAGAATACCTTTGCTGACTGGTG 495 Query 153310 TACCGGCAAACGTGCTATACGGCTC-ACTGTCAGACGCCAGTTTCAAACTGGCATCGAGC 153368 || ||| | || || || | | | | | |||| || | ||||| || | Sbjct 496 ACCCCGCATATGTTTCGTATGGGCCGAATTTTTCA-GCCAATTCACAGCTGGCTTCCAAT 554 Query 153369 GCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACG 153428 || ||| ||| | |||||| |||| |||| |||| | | | || || | Sbjct 555 GCACCATAATAAATGGTTTCGAAAATTTGTTGATTCATTTGAGCCGCCTGTGGACTTTCA 614 Query 153429 TACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGA 153488 || || |||| || | || |||||||||||||||||||| ||||| || |||||| Sbjct 615 TATGGATAACGCATCAAAATGAACGCATCGGCCAAACCTTGAATACCAATTCCAATGGGA 674 Query 153489 CGATGGCGCATATTAGAtttttttGCAGC-TTCAACAGGATAGAAATTGCGGTCGATAAT 153547 ||||| || |||| ||||||| ||| | |||| ||||| ||||| |||||||| Sbjct 675 CGATGTCGTTTATTCGATTTTTCTGCCTCGGGCAAC-GGATAATAATTGACATCGATAAT 733 Query 153548 TTTATTTAAA---CTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAAA 153604 ||| || ||| || | ||||| | | | | | | ||| |||||||||||| Sbjct 734 TTTGTTCAAATTTCTGGTAACGACTTTTGTGATGTC---TTTCAATTTTTGAAAATCAAA 790 Query 153605 CGTTCCATT---AATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGT 153661 ||| || ||| | | | || || |||||||| ||||| || ||||| ||| Sbjct 791 TGTTTTGTTTTGTGTGACAAACATATTAACAGCAATCGAGGCCAAATTACAAACAGCAAC 850 Query 153662 TTCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCC 153721 ||| || | || |||| || ||||| | ||| ||||| || ||| || ||| Sbjct 851 TTCATCTTTGTCGGTGTATTCAACGATTTCAGTACATAAATTACTACATCGGATAGTGCC 910 Query 153722 GCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCC 153781 ||| ||||||||| || ||||| || || || ||||| | ||||| |||||||| Sbjct 911 AAGATTCTGTTGATTGCTCTTTCGGTTGCATGCATCTTTGTACAAGATGTACGGTGTGCC 970 Query 153782 GGTTTC 153787 ||||| Sbjct 971 TGTTTC 976 >seq17930 Length=2109152 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || || || | || || || ||||| || || |||||| | Sbjct 1835534 CCACCACGAAGACGCAATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCGGAC 1835475 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| | |||||||| ||| | |||| |||||| || || || || Sbjct 1835474 AATGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTGGA 1835415 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| |||||| || | | ||| | |||||||| ||||| || Sbjct 1835414 ATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATTGTGTCGGATGGCTCGACT 1835355 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||||||||| | ||||| ||||| |||||||| Sbjct 1835354 TCAAGTGTGATAGTCTTGCCGGTTAGAGTTTTAACGAAAATTTGCAT 1835308 >seq317 Length=2337800 Score = 114 bits (126), Expect = 1e-20 Identities = 334/502 (67%), Gaps = 13/502 (3%) Strand=Plus/Plus Query 52564 AAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCCACTTTTGCCGAACGT 52623 || |||| ||||||||||| ||||||| | | | | | ||||| |||| |||||| Sbjct 1452925 AAGAAGGCCGATTGGGCATTACAATGGATTGGCAGCAAAACGGCCACATTTGGTGAACGT 1452984 Query 52624 CTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGTTTTGCGGCAATATTT 52683 | || || ||||| || ||||| | |||||| ||||| ||||| | || ||| Sbjct 1452985 GTTGTTGCATTTGCAGCTGTTGAAGGGATTTTTTTTAGCGGTAGCTTTGCATCTATTTTT 1453044 Query 52684 TACAT-CAAAACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCG 52742 | | |||| | ||| | |||||||||| | || ||| ||| || || || || || Sbjct 1453045 TGGTTGAAAAAACGTGGTC-TAATGCCCGGTTTAACATTTTCCAATGAATTAATTTCACG 1453103 Query 52743 CGACGAAGGAATGCACACAGATTTTGCGTGTTT-GTATTATAATACGCGCGTTAAAGAAA 52801 || || || ||||| |||||||| ||||| | || |||| ||| | ||| Sbjct 1453104 TGATGAGGGCATGCATTGTGATTTTGCATGTTTAATGTTTAAATA----TGTTGTACAAA 1453159 Query 52802 AATTGTCATATGAAAAAATTCTAGACATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGT 52861 || ||| | ||| | | | || || || || || ||||||||| || | Sbjct 1453160 AACCATCACAAGAACGTGTACGCAATATTATTGCTGAAGCGGTTCGCATTGAAAAGGAAT 1453219 Query 52862 TTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAA-CGCGACCATGATGTGCGAG 52920 |||| |||| || || || || ||| ||||||||||||| | | || ||||| | Sbjct 1453220 TTTTAACGGTTGCATTGCCAGTTTCAATGTTGGGCATGAATTGTGCTGAT-ATGTGTACG 1453278 Query 52921 TACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGGTCAGCCGAAATACTA-TAA 52979 ||||| || |||||||| || | |||||| || | || | | |||| | || | | Sbjct 1453279 TACATTGAATTTGTTGCCGATCGTTTGTTGA-GCGAATTGGGCTG-CGAACCATTATTCA 1453336 Query 52980 TGCGC-GTAACCCCTTTTCGTTTATGAACAACATATCGCTCGAGGGCAAAACAAACTTTT 53038 || | || || ||| |||||| | ||||| || | | |||||||| || || | Sbjct 1453337 TGGTCAAGAATCCATTTAAATTTATGGAAAACATTTCATTACAAGGCAAAACTAATTTCT 1453396 Query 53039 TCGAGAGACGTGTGGGCGAGTA 53060 | || | |||||| ||||| || Sbjct 1453397 TTGAAAAACGTGTCGGCGAATA 1453418 >seq193 Length=1219868 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| || || | || || ||||||||||||||||| |||||| Sbjct 521459 CCACCACGAAGACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGCTC 521518 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| | ||||||||| || | |||| ||| || ||||| || || Sbjct 521519 AAAGTACGACCGTCTTCTAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGA 521578 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || || | | ||| | ||||| | || || || Sbjct 521579 ATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACT 521638 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||| ||||| ||||| || || ||||||||| Sbjct 521639 TCCAATGTGATGGTCTTGCCAGTCAATGTTTTGACAAAGATTTGCATA 521686 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || || || | || || ||||||||||||||||| |||||| Sbjct 521687 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTC 521746 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||| ||| | |||| ||| || || || || || Sbjct 521747 AAAGTACGACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGGA 521806 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || || | | ||| | ||||| | || || ||| Sbjct 521807 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACC 521866 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || |||||||| ||||| || || |||||||| Sbjct 521867 TCCAAAGTGATGGTTTTTCCGGTCAATGTTTTCACAAAAATTTGCAT 521913 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | ||| | ||| || || | || || || ||||| || ||||| |||||| Sbjct 520061 CCGCCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTATAGTCGCTC 520120 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| | || || || ||| | |||| ||| || ||||| || || Sbjct 520121 AATGTACGGCCATCTTCCAATTGCTTGCCGGCAAAAATCAAACGCTGTTGATCTGGCGGA 520180 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| || | | ||| | ||||| | || || ||| Sbjct 520181 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGATGGTTCAACC 520240 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || |||||||| ||||| ||||| ||||||||| Sbjct 520241 TCCAAAGTGATGGTTTTTCCGGTCAATGTTTTGACGAAAATTTGCATA 520288 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || || || | || || |||||||||||||| || |||||| Sbjct 521003 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTC 521062 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||||||| | |||| ||||| ||||| || || Sbjct 521063 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGA 521122 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| ||| || || | | ||| | ||||| | || || || Sbjct 521123 ATACCCTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACT 521182 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || ||||| ||||| ||||| || || ||||||||| Sbjct 521183 TCCAAAGTGATGGTTTTGCCAGTCAATGTTTTGACAAAAATTTGCATA 521230 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || || || | || || || || |||||||| || |||||| Sbjct 521231 CCACCACGAAGACGCAAGACCAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCGCTC 521290 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | |||||| | |||||||| || | |||| ||| || ||||| || || Sbjct 521291 AATGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGA 521350 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || || | | ||| | ||||| | || || || Sbjct 521351 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACT 521410 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||| ||||| ||||| || || ||||||||| Sbjct 521411 TCCAAAGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCATA 521458 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| || || | || || ||||||||||||||||| ||| Sbjct 520566 CCACCACGAAGACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGGAT 520625 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | ||||||||| || | |||| ||| || ||||| || || Sbjct 520626 AAAGTGCGACCGTCTTCTAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGA 520685 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || || | | ||| | ||||| | || || || Sbjct 520686 ATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACT 520745 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || || ||||| ||||| || || ||||||||| Sbjct 520746 TCCAATGTGATGGTTTTTCCAGTCAATGTTTTGACAAAGATTTGCATA 520793 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || || || | || || ||||||||||||||||| |||||| Sbjct 520794 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTC 520853 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||||||| | |||| ||||| ||||| || || Sbjct 520854 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGA 520913 Query 139658 ATGCCTTCTTTGTC 139671 || ||||||||||| Sbjct 520914 ATACCTTCTTTGTC 520927 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || || || | || || |||||||||||||| || |||||| Sbjct 520289 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTC 520348 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| | |||||||||||| | |||| ||||| ||||| || || Sbjct 520349 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGA 520408 Query 139658 ATGCCTTCTTTGTC 139671 || || |||||||| Sbjct 520409 ATACCCTCTTTGTC 520422 >seq28 Length=2173237 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| || || | || || || ||||||||||| || ||| | Sbjct 1270005 CCACCACGAAGACGGAGAACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAC 1269946 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| | ||||| | |||||||||||| |||| | |||||| ||||| || || Sbjct 1269945 AATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGA 1269886 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| |||||| || | | ||| | ||||| | || || || Sbjct 1269885 ATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTTTCGATAGTGTCTGACGGTTCGACT 1269826 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || || | ||||| ||||| || ||||| Sbjct 1269825 TCGAGAGTGATAGTCTTACCCGTGAGGGTTTTAACGAAAATCTGCAT 1269779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495912235420000