Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq317 253 2e-62 >seq317 Length=2337800 Score = 253 bits (280), Expect = 2e-62 Identities = 554/818 (68%), Gaps = 19/818 (2%) Strand=Plus/Minus Query 13586 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13645 |||||| | || | |||||||||||| |||||||| |||| | ||| || |||||||| Sbjct 1453419 ATATTCGCCGACACGTTTTTCAAAGAAATTAGTTTTGCCTTGTAATGAAATGTTTTCCAT 1453360 Query 13646 AAAATCAAATGGATTTATTGAC-ATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 13704 ||| | ||||||||| ||||| || || | | || || || | ||| | || | Sbjct 1453359 AAATTTAAATGGATTC-TTGACCATGAATAATGGTTCGCAGCCCAATTCGCTCAACAAAC 1453301 Query 13705 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13764 ||| |||| ||| ||||| || | |||| | |||||||||| || | | | | Sbjct 1453300 GATCGGCAACAAATTCAATGTACGTACACATATCAGCACAATTCATGCCCAACATTGAAA 1453241 Query 13765 CAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTG 13824 | || | | | ||||||||||| ||||| || || || || |||||| | Sbjct 1453240 CTGGCAATGCAACCGTTAAAAATTCCTTTTCAATGCGAACCGCTTCAGCAATAATATTGC 1453181 Query 13825 TAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCAC 13884 | | || | || || | | | || |||||| |||||||| |||||||||| Sbjct 1453180 GTACACGTTCTTGTGATGGTTTTTGTACAACATATTTAAACATTAAACATGCAAAATCAC 1453121 Query 13885 AATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATC 13944 |||| | ||||||||| | ||| | ||| || ||||||||||| || ||||| | | Sbjct 1453120 AATGCATGCCCTCATCACGTGAAATTAATTCATTGGAAAATGTTAAACCGGGCATTAGAC 1453061 Query 13945 CTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTG 14004 | |||||||| |||||||| || | ||||| ||| ||| || || || ||||| | Sbjct 1453060 CACGTTTTTTCAACCAAAAAATAGATGCAAAGCTACCGCTAAAAAAAATCCCTTCAACAG 1453001 Query 14005 CAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAG 14064 | ||||| || | | ||||| ||||| | || ||||| | ||||||| | | Sbjct 1453000 CTGCAAATGCAACAACACGTTCACCAAATGTGGCCGTTTTGCTGCCAATCCATTGTAATG 1452941 Query 14065 CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA--TTC 14122 |||| || | || ||||||| | | || ||||| || |||||||| ||| | | | Sbjct 1452940 CCCAATCGGCCTTCTTTTTAACACATGGCAACGTTTCGATGGCATTAAACAAAAAATTAC 1452881 Query 14123 CTTCTCTTTAGT-ACTTG--AAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179 |||| | || || || | ||| ||||| || || || |||||||||||||| Sbjct 1452880 GTTCTTCATCGTCACGTGCATACTGT-TGTATTAA----TAGACTGTACATTTCAGAGTG 1452826 Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 | ||||| || || || ||||| ||||||||| | | ||||| | ||| || || Sbjct 1452825 CACATTTTCAATGGCCATTTGAAAGCCATAAAAGAAACGTGCTTCAGTTACTTGAACCTC 1452766 Query 14240 CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14299 | ||| | ||| | ||||||||||| || || ||||| || |||||||| || Sbjct 1452765 TTGGCTAAAACGTTCAACTAAATTTTCATTGACGATGCCATCGGATGCAGCAAAAAAGGC 1452706 Query 14300 CAATATGT-TTTTAATAAAGTA--TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGAT-- 14354 ||| | | |||| ||| || || ||||| || | || ||||||| ||| Sbjct 1452705 CAACACATGCTTTATGAAATTACGTTCATCTTCGTTCATTTTATTGTTCCAAT--GATCC 1452648 Query 14355 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 | |||||| | | || ||||| |||||||||||||| Sbjct 1452647 ATATCCTTTGTCAAGTCAACTTCTTCAACTGTCCAAAA 1452610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479581233215000