Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq317 237 2e-57 >seq317 Length=2337800 Score = 237 bits (262), Expect = 2e-57 Identities = 548/816 (67%), Gaps = 15/816 (2%) Strand=Plus/Minus Query 13374 ATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13433 |||||| | || | ||||||||| || |||||||| |||| | ||| || |||||||| Sbjct 1453419 ATATTCGCCGACACGTTTTTCAAAGAAATTAGTTTTGCCTTGTAATGAAATGTTTTCCAT 1453360 Query 13434 AAAATCGAATGGATTTGTTGAC-ATAAACACTTTATCACAACCTAGTTCTAATAATAATC 13492 ||| | |||||||| ||||| || || | | || || || | ||| || || | Sbjct 1453359 AAATTTAAATGGATTC-TTGACCATGAATAATGGTTCGCAGCCCAATTCGCTCAACAAAC 1453301 Query 13493 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13552 ||| |||| ||| ||||| || | |||| | |||||||||| || | | | | Sbjct 1453300 GATCGGCAACAAATTCAATGTACGTACACATATCAGCACAATTCATGCCCAACATTGAAA 1453241 Query 13553 CAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT 13612 | || | | | ||||||||||| ||||| || || || || |||||| | Sbjct 1453240 CTGGCAATGCAACCGTTAAAAATTCCTTTTCAATGCGAACCGCTTCAGCAATAATATTGC 1453181 Query 13613 TAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCAC 13672 | | || | || || | | | || |||||| |||||||| |||||||||| Sbjct 1453180 GTACACGTTCTTGTGATGGTTTTTGTACAACATATTTAAACATTAAACATGCAAAATCAC 1453121 Query 13673 AATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATC 13732 |||| | ||||||||| | ||| | ||| || ||||||||||| || ||||| | | Sbjct 1453120 AATGCATGCCCTCATCACGTGAAATTAATTCATTGGAAAATGTTAAACCGGGCATTAGAC 1453061 Query 13733 CTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTG 13792 | |||||||| |||||||| || | || || ||| ||| || || || ||||| | Sbjct 1453060 CACGTTTTTTCAACCAAAAAATAGATGCAAAGCTACCGCTAAAAAAAATCCCTTCAACAG 1453001 Query 13793 CAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAG 13852 | ||||| || | | ||||| ||||| | || ||||| | ||||||| | | Sbjct 1453000 CTGCAAATGCAACAACACGTTCACCAAATGTGGCCGTTTTGCTGCCAATCCATTGTAATG 1452941 Query 13853 CCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT--C 13910 |||| || | || ||||||| | | || |||||||| ||||| || ||| | | Sbjct 1452940 CCCAATCGGCCTTCTTTTTAACACATGGCAACGTTTCGATGGCATTAAACAAAAAATTAC 1452881 Query 13911 CTTCTCTTTAGT-ACTTGAAA--TGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 |||| | || || || | ||| ||||| |||| || |||||||||||||| Sbjct 1452880 GTTCTTCATCGTCACGTGCATACTGT-TGTATTAATAGA----CTGTACATTTCAGAGTG 1452826 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 | ||||| || || || ||||| |||||||| | | ||||| | ||| ||||| Sbjct 1452825 CACATTTTCAATGGCCATTTGAAAGCCATAAAAGAAACGTGCTTCAGTTACTTGAACCTC 1452766 Query 14028 CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGC 14087 | ||| | ||| | || |||||||| || || ||||| || |||||||| || Sbjct 1452765 TTGGCTAAAACGTTCAACTAAATTTTCATTGACGATGCCATCGGATGCAGCAAAAAAGGC 1452706 Query 14088 CAATATGT-TTTTAATAAAGTA--TTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAA 14144 ||| | | |||| ||| || || ||||| || | || ||||||| | | Sbjct 1452705 CAACACATGCTTTATGAAATTACGTTCATCTTCGTTCATTTTATTGTTCCAATGATCCAT 1452646 Query 14145 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 |||||| | | || ||||| |||||||||||||| Sbjct 1452645 ATCCTTTGTCAAGTCAACTTCTTCAACTGTCCAAAA 1452610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478442381739000