Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq17930 150 1e-31 seq193 122 7e-23 seq28 95.1 9e-15 seq6000 91.5 1e-13 >seq17930 Length=2109152 Score = 150 bits (166), Expect = 1e-31 Identities = 174/233 (75%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||||| | || |||||||| | ||||||||||||| Sbjct 1835534 CCACCACGAAGACGCAATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCGGAC 1835475 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 |||||||| | || ||||||||||| |||||||||||||| || ||||| || | || Sbjct 1835474 AATGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTGGA 1835415 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| | ||||| | | | ||||||| | |||||| Sbjct 1835414 ATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATTGTGTCGGATGGCTCGACT 1835355 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT-TTTCT 43114 || | || ||||| || |||||||||||||| || ||||||||||| ||||| Sbjct 1835354 TCAAGTGTGATAGTCTTGCCGGTTAGAGTTTTAACGAAAATTTGCATCTTTCT 1835302 >seq193 Length=1219868 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||||| | ||| || ||||| | || || ||| | Sbjct 521687 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTC 521746 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || ||||||||||| |||||||||||||| |||||||| || | || Sbjct 521747 AAAGTACGACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGGA 521806 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| | ||||| | ||| ||||| | ||||| Sbjct 521807 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACC 521866 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||||||||| | |||||||||||||||||||| Sbjct 521867 TCCAAAGTGATGGTTTTTCCGGTCAATGTTTTCACAAAAATTTGCAT 521913 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | || |||||||| | ||| || ||| | Sbjct 520061 CCGCCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTATAGTCGCTC 520120 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 |||||||| | || |||||||| ||||||||||||||||| ||||||||||| | ||| Sbjct 520121 AATGTACGGCCATCTTCCAATTGCTTGCCGGCAAAAATCAAACGCTGTTGATCTGGCGGA 520180 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| | ||||| | | | ||||| | || || Sbjct 520181 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGATGGTTCAACC 520240 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||||||||| | ||||| || ||||||||||| Sbjct 520241 TCCAAAGTGATGGTTTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 520287 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||||| | || ||||| || | ||||| ||| | Sbjct 521231 CCACCACGAAGACGCAAGACCAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCGCTC 521290 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 |||||||| |||| ||||||||||| ||||| |||||||| ||||||||||| | || Sbjct 521291 AATGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGA 521350 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || |||| | || || | | | ||||| | || || Sbjct 521351 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACT 521410 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || | ||||| |||||||||||||| Sbjct 521411 TCCAAAGTGATGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521457 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||||| | ||| || ||||| | ||||| ||| | Sbjct 521003 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTC 521062 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || ||||||||||| || |||||||||||||| |||||||| | || Sbjct 521063 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGA 521122 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| ||||| || |||| | || || | | | ||||| | || || Sbjct 521123 ATACCCTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACT 521182 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || | ||||| |||||||||||||| Sbjct 521183 TCCAAAGTGATGGTTTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521229 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | || || ||||| | || || ||||| Sbjct 520566 CCACCACGAAGACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGGAT 520625 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || |||| || || ||||| ||||| |||||||| ||||||||||| | || Sbjct 520626 AAAGTGCGACCGTCTTCTAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGA 520685 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || |||| | ||||| | ||| ||||| | || || Sbjct 520686 ATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACT 520745 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || | ||||| ||||| |||||||| Sbjct 520746 TCCAATGTGATGGTTTTTCCAGTCAATGTTTTGACAAAGATTTGCAT 520792 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||||| | ||| || ||||| | ||||| ||| | Sbjct 520289 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTC 520348 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || ||||||||||| || |||||||||||||| |||||||| | || Sbjct 520349 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGA 520408 Query 43003 ACACCTTCTTTTTC 43016 | ||| ||||| || Sbjct 520409 ATACCCTCTTTGTC 520422 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||||| | ||| || ||||| | || || ||| | Sbjct 520794 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTC 520853 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || ||||||||||| || |||||||||||||| |||||||| | || Sbjct 520854 AAAGTACGACCATCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGA 520913 Query 43003 ACACCTTCTTTTTC 43016 | ||||||||| || Sbjct 520914 ATACCTTCTTTGTC 520927 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | || || ||||| | || || ||| | Sbjct 521459 CCACCACGAAGACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGCTC 521518 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| |||| || || ||||| ||||| |||||||| ||||||||||| | || Sbjct 521519 AAAGTACGACCGTCTTCTAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGA 521578 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || |||| | ||||| | ||| ||||| | || || Sbjct 521579 ATACCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACT 521638 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || | ||||| ||||| |||||||| Sbjct 521639 TCCAATGTGATGGTCTTGCCAGTCAATGTTTTGACAAAGATTTGCAT 521685 >seq28 Length=2173237 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||||| || |||||||| | ||||| |||||| Sbjct 1270005 CCACCACGAAGACGGAGAACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAC 1269946 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 |||||||| | || ||||||||||| || ||||| || || || |||||||| | || Sbjct 1269945 AATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGA 1269886 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| | ||||| | | | ||||| | ||||| Sbjct 1269885 ATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTTTCGATAGTGTCTGACGGTTCGACT 1269826 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| || || || || ||||| || ||||| ||||| Sbjct 1269825 TCGAGAGTGATAGTCTTACCCGTGAGGGTTTTAACGAAAATCTGCAT 1269779 >seq6000 Length=1279 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || ||||| || | || |||||||| | ||| || ||| | Sbjct 1152 CCGCCACGAAGACGCAAGACCAAGTGCAATGTTGATTCCTTTTGGATATTATAGTCGCTC 1211 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 |||||||| | || |||||||| ||||||||||||||||| ||||||||||| | || Sbjct 1212 AATGTACGGCCATCTTCCAATTGCTTGCCGGCAAAAATCAAACGCTGTTGATCTGGTGGT 1271 Query 43003 ACACCTTC 43010 | |||||| Sbjct 1272 ATACCTTC 1279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381255841619550