Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq33 125 1e-23 seq29 107 3e-18 seq6116 86.0 9e-12 >seq33 Length=1400293 Score = 125 bits (138), Expect = 1e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 70317 TGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTA 70376 |||||||| || ||||| ||||| | |||||||| || || |||||||||||| || Sbjct 741741 TGTATCAGCGGTCAGCCGATATGGGTTTAGGTGTACCATTCAATATTGCAAGCTATGCTT 741682 Query 70377 TGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCA 70436 ||||| ||||||||||||| |||| ||| ||||| | ||| ||| | || || | Sbjct 741681 CATTGACATACATGATTGCTCATGTTACTGGCTTGAAACCAGGCGATTTCATCCATACAA 741622 Query 70437 TTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAG 70480 ||||||| ||||| || ||| | ||||| || || ||||||||| Sbjct 741621 TTGGCGATGCTCATGTTTATCTCAATCATATTGAACCATTAAAG 741578 >seq29 Length=2096867 Score = 107 bits (118), Expect = 3e-18 Identities = 303/463 (65%), Gaps = 2/463 (0%) Strand=Plus/Plus Query 97800 GCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTTTTGAACCG 97859 || || ||||| || |||| || | ||| | | ||||| |||||| || ||||| Sbjct 937735 GCTCCAATGCCGACAGCTAGTACGGCTCAAATTCTCGGCAACAATGAATCATTCGAACCT 937794 Query 97860 TTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAATTGACCAACGTG 97919 | ||| ||||| || || | | || | || || || |||||| || ||| Sbjct 937795 TACACATCAAATATTTATAATCGCCGTGTTCTTTCCGGTGAATTTCAAGTGGTCAATCAT 937854 Query 97920 CACTTGGTTCGAGACTTGGAACGGC-TCAATCTGTGGAACGATGACATGGCCCAGTTGAT 97978 || || | ||| ||| | || || || ||||| ||||||||||| | || Sbjct 937855 CATCTGATCAAAGATTTG-ACCGAAATCGATATGTGGGACGATGACATGAAAAACGAAAT 937913 Query 97979 CATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTGCGCAGAAT 98038 ||| | | |||| || |||||||| || || || || |||| | ||| | Sbjct 937914 CATTGCCGATTATGGTTCAATTCAAAATATCACACGAATTCCACAAGAAATTCGCGATTT 937973 Query 98039 CTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGG 98098 ||||| || || ||||| || | || || ||| |||||||||| || | || Sbjct 937974 ATACAAAACCGTTTGGGAAATATCTGTTAAAACAACCATCAATATGGCTGCTGATCGGGG 938033 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 || | ||| || || ||||||||||||||| || | || ||||| || || ||| Sbjct 938034 TGCGTTCATCGATCAAAGTCAATCGTTCAATTTGCATGTGGCCGAACCAACATACGCAAA 938093 Query 98159 TATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCT 98218 ||||||||||| || ||||| |||||||| || ||||| || || ||||| ||| | Sbjct 938094 AATGACTTCGATTCATTTTTATGCATGGAAAGCCGGTCTCAAAACAGGAATGTATTATTT 938153 Query 98219 GAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 | | || | ||| | ||| | || | |||||| || ||| Sbjct 938154 GCGCACTCGACCAGCCGCAAATCCAATTCAATTTACTGTTGAC 938196 >seq6116 Length=1078 Score = 86.0 bits (94), Expect = 9e-12 Identities = 231/348 (66%), Gaps = 4/348 (1%) Strand=Plus/Minus Query 97783 GAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATG 97842 |||| || ||||| | ||||| ||||| || || | ||| | ||| | |||| || Sbjct 390 GAAATTCATTGCTACTTGCACCCATGCCTACCGCCAGCACGGCTCAAATCCTTGGTAACA 331 Query 97843 CTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGT 97902 ||||| ||||| |||| ||| |||||||| ||| | | || || || || | Sbjct 330 ACGAATCATTTGAGCCGTACACATCAAACATTTACAATCGTCGTGTTTTATCCGGTGAAT 271 Query 97903 TTCAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACGG-CTCAATCTGTGGAACGAT 97961 ||||| || ||| || ||| || ||| ||| | || || | ||||| | ||| Sbjct 270 TTCAAGTGGTCAATCATCATTTGATTAAAGATTTG-ACCGAACTGGAGATGTGGGATGAT 212 Query 97962 GACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCG 98021 || ||| | ||||| | || |||| || || ||||| || || ||| || Sbjct 211 GATATGAAAAATGAAATCATTGCCGACTATGGTTCGATCCAAAATATAACTCGCATTCCA 152 Query 98022 GAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGAT-TCCGACCAAGACGCTGATCGA 98080 ||||| | || | | || || ||||| ||||| || |||| ||||| || | Sbjct 151 AAAGAGATCCGTGAATTGTATAAAACTGTTTGGGAAATCTCCGTT-AAGACCACAATTAA 93 Query 98081 TATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAA 98128 |||||||||||| | |||| | |||||| || ||||||||||| || Sbjct 92 TATGGCTGCCGATCGTGGTGCATTCATTGATCAAAGTCAATCGTTTAA 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740832482201000