Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq21716 100 2e-16 >seq21716 Length=743 Score = 100 bits (110), Expect = 2e-16 Identities = 229/335 (68%), Gaps = 16/335 (5%) Strand=Plus/Plus Query 99229 TCGGAGACGAACGCGCCCTGTATCCGGAT-GGC--GCTGCGCGCCCCCACTGGCAGAAAT 99285 ||||| ||||| ||||| |||| |||||| ||| |||| | ||| |||| | Sbjct 412 TCGGACACGAA-GCGCCATGTACCCGGATCGGCAGGCTG---GTGCCCGGCGGCATGTAG 467 Query 99286 AACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTA 99345 | | |||||| |||| ||||||||||| ||||||| ||| | ||| || Sbjct 468 AGCATGTCACCGTGGCCCAGCAGTTGCTCGGCGCCGCCCTGGTCGATGATGGTGCGCGAG 527 Query 99346 TCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCC 99405 ||| | | || | ||||| || | | ||| | |||| |||||| || || Sbjct 528 TCGATCTTGCTCGATACCTGGAACGCCATCGGGTCGGG-ATGTTGGCCTTGATCAGACCG 586 Query 99406 GTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGC 99465 || | ||| ||||| || || ||||| || || || | | ||||| |||||||| ||| Sbjct 587 GTGATCACGTCCACCGACGGGCGCTGGGTGGC-AGAATCAAGTGAATACCGGCCGCCCGC 645 Query 99466 GCCTTCTGCGCGATGCGGACAAT--GTTGGCCTCAACCTCTTTCTTGTAGCCACCCATCA 99523 |||||||||||||| || | || ||| | || ||| |||||| | | ||||| Sbjct 646 GCCTTCTGCGCGATACGCGCGATCAGTT--CTTCGACC---TTCTTGCCGACGATCATCA 700 Query 99524 TGAGATCAGCGAGTTCATCCACCACTACCACGATG 99558 | | || |||| ||| |||||||||||||||||| Sbjct 701 TCATGTCGGCGAATTCGTCCACCACTACCACGATG 735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354537413812350