Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq193 134 1e-26 seq17930 109 4e-19 seq28 107 1e-18 >seq193 Length=1219868 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| | || || |||||||| ||||| || ||||| | | | | | ||| Sbjct 521702 AATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCATCT 521761 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| || || | |||||||| |||||||| |||||||||||||||||| Sbjct 521762 TCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTGTCT 521821 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| ||| |||| ||||| || ||| || || || || |||||| Sbjct 521822 TGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACCTCCAAAGTGATGGTT 521881 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||| ||||| |||||||||||||| Sbjct 521882 TTTCCGGTCAATGTTTTCACAAAAATTTGCAT 521913 Score = 129 bits (142), Expect = 4e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| | || || |||||||| ||||| || ||| || | | | ||||||| Sbjct 520583 AACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGGATAAAGTGCGACCGTCTTC 520642 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||| ||||| || ||| | |||||||| ||||| || |||||| ||||||||||| Sbjct 520643 TAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTG 520702 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| ||| |||| ||||| || ||| || || || || |||||||| Sbjct 520703 GATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTTTT 520762 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||||| ||||| ||||||||| Sbjct 520763 TCCAGTCAATGTTTTGACAAAGATTTGCATA 520793 Score = 129 bits (142), Expect = 4e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| | || || |||||||| ||||| || ||||| | | | | ||||||| Sbjct 521476 AACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCGTCTTC 521535 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||| ||||| || ||| | |||||||| ||||| || |||||| ||||||||||| Sbjct 521536 TAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTG 521595 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| ||| |||| ||||| || ||| || || || || ||||| || Sbjct 521596 GATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTCTT 521655 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||||| ||||| ||||||||| Sbjct 521656 GCCAGTCAATGTTTTGACAAAGATTTGCATA 521686 Score = 127 bits (140), Expect = 1e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| | || || |||||||| |||||||| ||||| | | | | | ||| Sbjct 521018 AATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTACGACCATCT 521077 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| ||||| | ||||| |||||||| || |||||| || |||||||| Sbjct 521078 TCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCCTCTTTGTCT 521137 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| || |||| ||||| || ||| || || || || |||||| Sbjct 521138 TGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGATGGTT 521197 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||||| ||||||||||||||| Sbjct 521198 TTGCCAGTCAATGTTTTGACAAAAATTTGCATA 521230 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| | || || || || || |||||||| ||||| | | | ||||| Sbjct 521246 AAGACCAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCGCTCAATGTACGACCGTCT 521305 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| || ||| | |||||||| ||||| || |||||| ||||||||||| Sbjct 521306 TCCAATTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCT 521365 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 || ||| ||| || |||| ||||| || ||| || || || || ||||| Sbjct 521366 TGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGATGGTC 521425 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| ||||| ||||||||||||||| Sbjct 521426 TTGCCAGTCAATGTTTTGACAAAAATTTGCATA 521458 Score = 102 bits (112), Expect = 6e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| | || || || ||||| || || || ||||| | | | | ||||| Sbjct 520078 AACCAAATGCAATGTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCTTC 520137 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||| ||||| || | |||||||| ||||| || ||||| ||||||||||| Sbjct 520138 CAATTGCTTGCCGGCAAAAATCAAACGCTGTTGATCTGGCGGAATACCTTCTTTGTCTTG 520197 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| || |||| ||||| || ||| || || || || |||||||| Sbjct 520198 GATTTTAGCCTTGACGTTTTCGATGGTGTCTGATGGTTCAACCTCCAAAGTGATGGTTTT 520257 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||||| || |||||||||||| Sbjct 520258 TCCGGTCAATGTTTTGACGAAAATTTGCATA 520288 Score = 95.1 bits (104), Expect = 9e-15 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || ||||| | || || |||||||| ||||| || ||||| | | | | | ||| Sbjct 520809 AATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCATCT 520868 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| ||||| | ||||| |||||||| || |||||| ||||||||||| Sbjct 520869 TCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCTTCTTTGTCT 520928 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATC 15303 || ||| ||| ||| |||| ||||| || Sbjct 520929 TGGATCTTGGCCTTGACATTTTCAATGGTGTC 520960 >seq17930 Length=2109152 Score = 109 bits (120), Expect = 4e-19 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGT 15209 || || ||||| | || || || ||||| || ||||||||| | ||| || | | Sbjct 1835519 AATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCGG--ACAATGTACGGCCAT 1835462 Query 15210 CTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGT 15269 |||| |||||||| || || | ||||||||||||||||| |||||| |||||||||| Sbjct 1835461 CTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTGGAATGCCTTCTTTGT 1835402 Query 15270 CACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGG 15329 | ||||| ||| ||| |||| || || ||| || || || | || || | Sbjct 1835401 CTTGGATTTTAGCCTTGACATTTTCGATTGTGTCGGATGGCTCGACTTCAAGTGTGATAG 1835342 Query 15330 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 | || || || |||||||| || ||||||||||| ||| Sbjct 1835341 TCTTGCCGGTTAGAGTTTTAACGAAAATTTGCATCTTT 1835304 >seq28 Length=2173237 Score = 107 bits (118), Expect = 1e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCT 15211 ||| ||||| || || || || ||||| |||||||| ||| | ||| || | ||| Sbjct 1269988 AACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCGG--ACAATGTACGACCATCT 1269931 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| ||||| | || ||||||||||| || |||||||||||| ||||| Sbjct 1269930 TCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCT 1269871 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| ||| ||| |||| || || || ||| || || | || || || Sbjct 1269870 TGGATTTTGGCCTTGACATTTTCGATAGTGTCTGACGGTTCGACTTCGAGAGTGATAGTC 1269811 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || ||||| || ||||| ||||| Sbjct 1269810 TTACCCGTGAGGGTTTTAACGAAAATCTGCAT 1269779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362071165905975