Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq17930 122 6e-23 seq193 100 2e-16 seq28 93.3 3e-14 >seq17930 Length=2109152 Score = 122 bits (134), Expect = 6e-23 Identities = 164/227 (72%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||||||| ||||| || || ||||| ||||||||||| ||||| | | Sbjct 1835522 CGCAATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCGGACAATGTACGGCCA 1835463 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || |||||||| || || ||| || |||||||| ||||| | || ||||||||||| Sbjct 1835462 TCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTGGAATGCCTTCTTTG 1835403 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || ||| || |||||| || | || || || || Sbjct 1835402 TCTTGGATTTTAGCC---TTGACATTTTCGATTGTGTCGGATGGCTCGACTTCAAGTGTG 1835346 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTTATGGT 33378 || || || || || |||||||| |||||||||||||| ||| |||| Sbjct 1835345 ATAGTCTTGCCGGTTAGAGTTTTAACGAAAATTTGCATCTTTCTGGT 1835299 >seq193 Length=1219868 Score = 100 bits (110), Expect = 2e-16 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||||||||| || || |||||||| || || || || |||| | | Sbjct 521699 CGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCA 521758 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || |||||||| || || ||| || ||||| || ||||| | || || |||||||| Sbjct 521759 TCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTG 521818 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || ||| ||| ||||| |||| || |||| ||| Sbjct 521819 TCTTGGATCTTGGCC---TTGACATTTTCAATGGTGTCTGATGGTTCGACCTCCAAAGTG 521875 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || |||||||| || | ||||| || |||||||||||| || Sbjct 521876 ATGGTTTTTCCGGTCAATGTTTTCACAAAAATTTGCATGGTT 521917 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||| || || ||||| ||||| || || ||| | | || ||| Sbjct 520079 ACCAAATGCAATGTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCTTCC 520138 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277 |||||||| || ||| || ||||| || || || | || || |||||||| || | Sbjct 520139 AATTGCTTGCCGGCAAAAATCAAACGCTGTTGATCTGGCGGAATACCTTCTTTGTCTTGG 520198 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | |||| | || ||| || ||||| |||| ||| |||| ||| || ||| Sbjct 520199 ATTTTAGCCT---TGACGTTTTCGATGGTGTCTGATGGTTCAACCTCCAAAGTGATGGTT 520255 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || | ||||| |||||||||||||| Sbjct 520256 TTTCCGGTCAATGTTTTGACGAAAATTTGCAT 520287 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||||||||| || || |||||||| || ||||| || |||| | | Sbjct 521015 CGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTACGACCA 521074 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || |||||||| || ||| ||| || || ||||| || || | || || || ||||| Sbjct 521075 TCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCCTCTTTG 521134 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || ||| || ||||| |||| ||| |||| ||| Sbjct 521135 TCTTGGATCTTGGCC---TTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTG 521191 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || | ||||| || ||||||||||| Sbjct 521192 ATGGTTTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521229 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||| || |||||||| || || || || || ||| || | ||| || Sbjct 520584 ACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGGATAAAGTGCGACCGTCTTCT 520643 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 || || || || || || ||||| || || || | || || |||||||| || | Sbjct 520644 AACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 520703 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| ||| ||||| |||| ||| |||| || || ||| Sbjct 520704 ATCTTGGCC---TTGACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTT 520760 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || | ||||| || || |||||||| Sbjct 520761 TTTCCAGTCAATGTTTTGACAAAGATTTGCAT 520792 >seq28 Length=2173237 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| | ||| || || ||||| || ||||| || ||||| | | || ||| Sbjct 1269987 ACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCGGACAATGTACGACCATCTTCC 1269928 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 ||||| || ||| ||| ||||||||||| || || | || || ||||| || || | Sbjct 1269927 AATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGG 1269868 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| || ||||| |||| || || ||||| || || Sbjct 1269867 ATTTTGGCC---TTGACATTTTCGATAGTGTCTGACGGTTCGACTTCGAGAGTGATAGTC 1269811 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || ||||| || ||||| |||||||| |||||| || Sbjct 1269810 TTACCCGTGAGGGTTTTAACGAAAATCTGCATGGTT 1269775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318682512128550