Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_005056.1 Length=32684 Score E Sequences producing significant alignments: (Bits) Value seq10355 125 1e-24 seq898 86.0 1e-12 >seq10355 Length=764 Score = 125 bits (138), Expect = 1e-24 Identities = 317/478 (66%), Gaps = 3/478 (1%) Strand=Plus/Minus Query 18629 CGGCGGGAACGATGGCCGGTGTTAAGTTGCTGATGCCCGGTTATGAGTTTGCGCAGAAAA 18688 ||| ||| || | ||||||| | |||| | ||| || || || || |||| | | Sbjct 513 CGGTGGGCGCGGTAGCCGGTGCTGCCGTGCTCAAGCCGGGATACGACTTCGCGCTGGCTA 454 Query 18689 ACTCAGAATTGCAGGCCGTGCTCGGCGTGGCAAAAGACTCCGCCGAAATGGCCGCACTCC 18748 |||| ||||||| ||||||| | | |||| ||| || || | | || | Sbjct 453 ACTCCACGCTGCAGGCAACGCTCGGCCTTGATAAAGGCTCGGCAGAGTTTCAGTCCCTGC 394 Query 18749 GCAAGCAGGCGCGCCAGC-TCGGTGACAATACTGCCGCCTCGGCGGATGATGCAGCCGGT 18807 ||| |||||||||| ||| ||||||| || || ||||| ||||| | ||||| || Sbjct 393 GCACGCAGGCGCGC-AGCATCGGTGATAACACAGCCGCATCGGCCAACGATGCCGCGCAG 335 Query 18808 GCACAGATTATCATTGCGAAAGCCGGTGGAGATGCTGCGGCTATTCAGGCGGCAACGCCG 18867 || ||||| || || || ||| | || || | | | || ||||||||||||| Sbjct 334 GCGCAGATCATTATCGCTAAATCGGGCGGTAGCGTGGACGACATCAAGGCGGCAACGCCA 275 Query 18868 GTCACGCTGAATATGGCACTGGCGAATCAGCGGTCGATGGAAGAAAACGCGCAACTGTTG 18927 || |||||| ||||| | ||||| || | || |||||||||||| ||| ||| || Sbjct 274 GTGACGCTGGATATGTCGCTGGCAAACAATCGCACGATGGAAGAAAGCGCCTCGCTGCTG 215 Query 18928 CTGGGGACTAAGGCATCCTTTCAACTGTCAAATGATGATGTCAGTCATGTGGGCGACGTG 18987 || | || || ||||| ||| | || || || ||| | ||||||||| Sbjct 214 ATGAGTACCAAAAACGCCTTTGGCCTGGCTAACAGCGAGGTGGCCCATCTCGGCGACGTG 155 Query 18988 TTGTCGGCAACGATGAATAAGTCGGCGGCTGATTTTCAGGGACTCAGTGATGCACTGACT 19047 | |||||| |||| ||| | || || | ||| | || || || ||||| ||||| Sbjct 154 ATCAGCGCAACGCTGAACAAGACCGCCGCAAACTTTGACGGCCTGAGCGATGCGCTGACC 95 Query 19048 TATCTCGGCCCGGTTGCGAAGACGGCAGGTGTAAGTCTTGAGCAGGCAGCAGCCATGA 19105 || ||| || || ||||| || || || || || | |||||| | | || |||| Sbjct 94 TACATCGCACCAGTGGCGAAAAC-GCGGGCGTCAGCGTCGAGCAGACCACCGCAATGA 38 >seq898 Length=598 Score = 86.0 bits (94), Expect = 1e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 11428 AACCCGGACACCTGCCCGGCAAATCTGCTGCCGTGGCTGGCGTGGGCGTTTTCGGTCGAC 11487 |||||||||||||||||||| | ||||| | || ||||| | || || ||| Sbjct 569 AACCCGGACACCTGCCCGGCGCACCTGCTTTACCAATTAGCTTGGGCCTGGTCCGTGGAC 510 Query 11488 AGGTGGGATGAAAAGTGGCCGGAAGCGACCAAACGTGCCGTTATCCGCGATGCCTATTTC 11547 | ||||| || |||||| |||| | ||| || | || |||||| | | | | | Sbjct 509 CGCTGGGACGAGGCGTGGCCCGAAGAGGTCAAGCGCTCGGTGATCCGCTCTTCGTTCTAC 450 Query 11548 ATCCACTGTCATAAAGGCACTATCGGCGCAATCCGGCGTGTGGTGGAGCCGCTCGGCTAT 11607 ||||| |||||||| || ||||| || | || || |||||||| ||| |||||||| Sbjct 449 GTCCACGCCCATAAAGGAACCATCGGGGCTCTGCGCCGGGTGGTGGAACCGTTCGGCTAT 390 Query 11608 CTCAT 11612 || || Sbjct 389 CTGAT 385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104436837587700