Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq193 109 4e-19 seq17930 104 2e-17 seq28 86.0 4e-12 >seq193 Length=1219868 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || |||||||| | || ||||||||||| ||||| ||| | || ||| |||| Sbjct 521702 AATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCATCT 521761 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| || ||||| ||||| || || ||||| | || | |||||||| ||| Sbjct 521762 TCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTGTCT 521821 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || || ||||| | ||| || |||| || || || || | || || ||| Sbjct 521822 TGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACCTCCAAAGTGATGGTT 521881 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || ||||| || || |||||||| ||||||||| Sbjct 521882 TTTCCGGTCAATGTTTTCACAAAAATTTGCATG 521914 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || |||||||| | || ||||||||||| || || ||| | || ||| |||| Sbjct 521018 AATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTACGACCATCT 521077 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| || ||||| ||||| ||||| || || | || | ||| ||||| ||| Sbjct 521078 TCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCCTCTTTGTCT 521137 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 || || || || | | | || |||| || || || || | || || ||| Sbjct 521138 TGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGATGGTT 521197 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || || || || ||||| |||||||| Sbjct 521198 TTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521229 Score = 82.4 bits (90), Expect = 5e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || |||||||| | || ||||||||||| ||||| ||| | || ||| |||| Sbjct 520809 AATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCATCT 520868 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| || ||||| ||||| ||||| || || | || | ||||||||| ||| Sbjct 520869 TCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCTTCTTTGTCT 520928 >seq17930 Length=2109152 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 43910 AACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCG 43969 || |||||||||| || || ||||| ||||| |||||| ||| ||| |||| Sbjct 1835519 AATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCGGACAATGTACGGCCATCT 1835460 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 ||||||||||| || ||||| ||||| ||||| ||||| | || | |||||||| ||| Sbjct 1835459 TCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTGGAATGCCTTCTTTGTCT 1835400 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||||| ||||| | | | || || | ||||| || || | || || || Sbjct 1835399 TGGATTTTAGCCTTGACATTTTCGATTGTGTCGGATGGCTCGACTTCAAGTGTGATAGTC 1835340 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || ||||||| ||| || || || |||||||| Sbjct 1835339 TTGCCGGTTAGAGTTTTAACGAAAATTTGCAT 1835308 >seq28 Length=2173237 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| || || || |||||||| || || ||| ||| ||| |||| ||| Sbjct 1269987 ACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCGGACAATGTACGACCATCTTCC 1269928 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || ||||| || || ||||| || || | || | ||||| || ||| Sbjct 1269927 AATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGG 1269868 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| ||||| | | | ||| |||| ||| || || |||| || || || ||| Sbjct 1269867 ATTTTGGCCTTGACATTTTCGATAGTGTCTGACGGTTCGACTTCGAGAGTGATAGTCTTA 1269808 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || | || || || || || |||||| Sbjct 1269807 CCCGTGAGGGTTTTAACGAAAATCTGCATG 1269778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354671773722300