Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq193 109 5e-19 >seq193 Length=1219868 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| |||||||| | || ||||||||||| |||||||| |||| || ||| | ||| Sbjct 521017 CAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTACGACCATC 521076 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||||||||| || ||| |||| | | |||||||| || | || |||||||| Sbjct 521077 TTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCCTCTTTGTC 521136 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 || || || || | | | | || ||||| ||||| || ||||| Sbjct 521137 TTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGATGGT 521196 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||||| ||||| |||||||||||||||||||| Sbjct 521197 TTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521229 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| |||||||| | || ||||||||||| ||||| || |||| || ||| | ||| Sbjct 521701 CAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCATC 521760 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||||||||| || ||| |||| | | |||||| || || | ||||||||||| Sbjct 521761 TTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTGTC 521820 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 || || || || | ||| | || ||||| |||| || ||||| Sbjct 521821 TTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACCTCCAAAGTGATGGT 521880 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| |||||||| ||||| |||||||||||||| Sbjct 521881 TTTTCCGGTCAATGTTTTCACAAAAATTTGCAT 521913 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| |||||||| | || ||||||||||| |||||||| |||| || ||| | ||| Sbjct 520303 CAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTACGACCATC 520362 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||||||||| || ||| |||| | | |||||||| || | || |||||||| Sbjct 520363 TTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCCTCTTTGTC 520422 Score = 82.4 bits (90), Expect = 6e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| |||||||| | || ||||||||||| ||||| || |||| || ||| | ||| Sbjct 520808 CAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCATC 520867 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||||||||| || ||| |||| | | |||||||| || | ||||||||||| Sbjct 520868 TTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCTTCTTTGTC 520927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419462041727475