Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_005178.1 Length=37611 Score E Sequences producing significant alignments: (Bits) Value seq4505 87.8 4e-13 >seq4505 Length=835 Score = 87.8 bits (96), Expect = 4e-13 Identities = 223/326 (68%), Gaps = 10/326 (3%) Strand=Plus/Minus Query 254 GGTATAGGCCTTGTTTTCGCTGATGATCGACACCGACCCGTCAAAGCGCCTTTGCAGGCG 313 || ||| ||| |||| ||||||||| | | ||| ||||| | | | |||||| || Sbjct 430 GGGATAAGCCGTGTTGGCGCTGATGACCAAGACCCCGCCGTCGATCTGGCGTTGCAGCCG 371 Query 314 CTTTGCATAGAGATGGTCATCCAGGCGAACGACGTAGACTGCCGCGTCTTGGACCGTTGA 373 ||| || || || ||||||||||||| | || || | ||| || | |||| || Sbjct 370 CTTGGCGTACAGGAGGTCATCCAGGCGTATCACATAAAACGCCTCGCCCTGGATGGTGTT 311 Query 374 CTTGGTGTGATCCACAAGCACTGTATCGCCATCGCACAGCAGAGGCTCCATAGAGTCACC 433 | || ||||||| | ||| |||||||| || || | ||||| | ||||| || Sbjct 310 CCGGGAAAGATCCACCATCACGGTATCGCCGTCCTTTAGAAACGGCTCGTTTGAGTCGCC 251 Query 434 GCCAATGCGGATCGCTGAGATACTG-GAGGGGTCCAAGCCCTTTTTTC-GCAGGCTGTAC 491 | | || | ||||| || ||| || | | | |||||||||||| ||| |||||| Sbjct 250 ATCCACCCGCACCGCTGCGA-GCTGCGACGCTTGC-AGCCCTTTTTTCTGCAAGCTGTAT 193 Query 492 CGGGTGAATGCCAG-ATTCACAAGCACGGTGGCGCCGTCGGTCCAGGAACCGT-GCCCTG 549 ||||| || || ||| | || | | ||||| ||| |||| | ||||| |||||| Sbjct 192 TTAGTGAAGGCAAGCATTGTC-AGGATGCGAGCGCCATCGCTCCAAGCACCGTGGCCCTG 134 Query 550 CGCTCA-CCTGGCCGTCATAGAGGGG 574 ||| | |||| ||||||| || || Sbjct 133 -GCTGATTCTGG-CGTCATACAGCGG 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120198655231350