Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq317 241 1e-58 >seq317 Length=2337800 Score = 241 bits (266), Expect = 1e-58 Identities = 556/828 (67%), Gaps = 11/828 (1%) Strand=Plus/Minus Query 12865 ATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCAT 12924 |||||||| || | ||||||||| || || ||||| |||| ||| ||||| |||||||| Sbjct 1453419 ATATTCGCCGACACGTTTTTCAAAGAAATTAGTTTTGCCTTGTAATGAAATGTTTTCCAT 1453360 Query 12925 AAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTA-CACCCTAATTCTAGTAACAATC 12983 ||| | || ||||| || || || | || | || || || ||||| ||||| | Sbjct 1453359 AAATTTAAATGGATTCTT-GACCATGAATAATGGTTCGCAGCCCAATTCGCTCAACAAAC 1453301 Query 12984 TGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTA 13043 || |||||||| || |||||| ||| | |||| ||||| || | | | | Sbjct 1453300 GATCGGCAACAAATTCAATGTACGTACACATATCAGCACAATTCATGCCCAACATTGAAA 1453241 Query 13044 CAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTC 13103 | |||| || | |||||||| | ||||| || ||| ||||| || || | | Sbjct 1453240 CTGGCAATGCAACCGTTAAAAATTCCTTTTCAATGCGAACCGCTTCAGCAATAATATTGC 1453181 Query 13104 TTATTACGTTCTC-TAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCA 13162 || ||||||| | |||| | | | || |||||||| | ||||||||||||| Sbjct 1453180 GTAC-ACGTTCTTGTGATGGTTTTTGTACAACATATTTAAACATTAAACATGCAAAATCA 1453122 Query 13163 CAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGC 13222 || |||| || ||||| | |||| || || |||||||||| ||| ||||| || Sbjct 1453121 CAATGCATGCCCTCATCACGTGAAATTAATTCATTGGAAAATGTTAAACCGGGCATTAGA 1453062 Query 13223 CCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACT 13282 || |||||||| | |||||| |||| ||||| ||| |||||| || |||||||| Sbjct 1453061 CCACGTTTTTTCAACCAAAAAATAGATGCAAAGCTACCGCTAAAAAAAATCCCTTCAACA 1453002 Query 13283 GCTGCAAACGCTATCAAC-CTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCT 13341 |||||||| || | |||| | ||||||| | || |||| || | ||||| | | Sbjct 1453001 GCTGCAAATGC-AACAACACGTTCACCAAATGTGGCCGTTTTGCTGCCAATCCATTGTAA 1452943 Query 13342 GGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtt 13401 ||||| | || || | |||||| || || |||| || || ||||| ||| |||| Sbjct 1452942 TGCCCAATCGGCCTTCTTTTTAACACATGGCAACGTTTCGATGGCATTAAACAAAAAATT 1452883 Query 13402 tttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAAT 13461 ||| | | ||| ||| | ||| |||| || |||||||| || || | Sbjct 1452882 ACGTTCTTCATCGTCACGTGCATACTGTTGTATTAATAGACTGTACATTTCAGAGTGCAC 1452823 Query 13462 ATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGA 13521 |||||| || || ||||| || |||||||| | | || || | ||| ||||| || Sbjct 1452822 ATTTTCAATGGCCATTTGAAAGCCATAAAAGAAACGTGCTTCAGTTACTTGAACCTCTTG 1452763 Query 13522 GTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAG 13581 | ||| | ||| |||| ||||| || || || || || ||||||||||| || | Sbjct 1452762 GCTAAAACGTTCAACTAAATTTTCATTGACGATGCCATCGGATGCAGCAAAAAAGGCCAA 1452703 Query 13582 TATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTA----ACCAATCTGGAAAAT 13637 | ||||| || || || ||| | ||| | | |||| ||||| | || Sbjct 1452702 CACATGCTTTATGAAATTACGTTCATCTTC-GTTCATTTTATTGTTCCAATGATCCATAT 1452644 Query 13638 CTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 | |||| || || || || ||||| |||||||| || || | |||| Sbjct 1452643 CCTTTGTCAAGTCAACTTCTTCAACTGTCCAAAATGATGCTTCTGCCT 1452596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430853842663950