Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq47 188 9e-43 seq33 113 5e-20 >seq47 Length=1394878 Score = 188 bits (208), Expect = 9e-43 Identities = 482/727 (66%), Gaps = 34/727 (5%) Strand=Plus/Minus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 ||||| ||| |||||| | ||||| ||||| ||||| | ||||| | || Sbjct 1267284 AATTTCAAAGCTATGGGAATTGGTGGTTTAGATACGGAATTCAGTGCAATTTTTCGTCGT 1267225 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATC-GAAATAATaaaaaaaTTAGGCTGTAAACATAT 164516 |||||||| ||| | | ||||| | | ||| | | || ||||||| || || || | Sbjct 1267224 GCATTTGCATCTCG-TGTGTTCCCACCAGAATTGGTTGAACAATTAGGTTGCAAGCACGT 1267166 Query 164517 AAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCAT 164576 ||||| |||||| || |||| |||||||| || ||||| || |||||||| || Sbjct 1267165 TAAAGGTATTTTACTATATGGTCCTCCTGGAACTGGAAAAACCTTGATGGCTCGTCAAAT 1267106 Query 164577 TGCTCAAGCTTTTAAA--TCGCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAAC 164634 | | || || || ||| || || || ||||| || ||||| || | | || Sbjct 1267105 CGGTAAAATGTTGAATGCTCGTGAGCCA--AAGATTGTCAACGGTCCACAAATTCTCGAC 1267048 Query 164635 AAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAA 164694 || ||||| ||||| |||||||| |||||| | | ||| ||| || ||||| |||||| Sbjct 1267047 AAGTATGTCGGTGAATCAGAAGCGAATGTTCGCAGGTTATTTGCCGATGCTGAGGAAGAA 1266988 Query 164695 CAAAAGAAAGCAGGTTTAGCTAGTAAA-----TTACATGTTATTGTTTTTGATGAGATAG 164749 | |||| | || || | | | |||||| | ||| | ||||||||||| | Sbjct 1266987 GA---GAAAC--GTTTGGGCCCGAACAGTGGCTTACATATAATTATATTTGATGAGATCG 1266933 Query 164750 ATGCTCTTTGCAAAAAACGTGG---------TGATAATATT---ATTCATGATGCAGTGG 164797 |||| |||| || ||||| || || | | |||||||| | || | Sbjct 1266932 ATGCCATTTGTAAGGCTCGTGGTTCAGTTGCTGGCAACAGTGGAGTTCATGATACGGTTG 1266873 Query 164798 TTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAG 164857 ||||||| |||||| ||||||| |||||||| ||| || ||||||||| | | | | Sbjct 1266872 TTAATCAATTGCTTGCTAAAATCGATGGTGTTGAACAATTGAATAATATTCTTGTGATCG 1266813 Query 164858 GTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAAT 164917 | ||||| || || | |||| | |||||||| || || | || || ||||| ||||| Sbjct 1266812 GAATGACGAATCGTCGTGATATGATTGATGAGGCATTGATGCGTCCAGGTCGTTTAGAGG 1266753 Query 164918 TGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCATG 164977 | |||| ||||| || ||||| | || || || |||||| | || ||||| Sbjct 1266752 TTCAAATGGAAATCGGTTTACCGAATGAAAGTGGCCGAACACAAATTCTTAATATTCATA 1266693 Query 164978 TGGCTAAAATG---AAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATAG 165034 ||| |||| ||| | | | | | ||||||||| || | | || | | Sbjct 1266692 CAGCTCGAATGCGTGAATTC---AAAAAAATCAATCCCGATGTTAATATCCAAGAATTGG 1266636 Query 165035 CTGCCGAAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGAGCCGCTCAAT 165094 |||| | || || |||| || ||||| ||| | || || ||||| | || || |||| Sbjct 1266635 CTGCAAAGACGAAGAATTTCAGCGGTGCAGAACTTGAAGGTTTAGTTCGTGCAGCACAAT 1266576 Query 165095 CAACCGC 165101 |||| || Sbjct 1266575 CAACTGC 1266569 >seq33 Length=1400293 Score = 113 bits (124), Expect = 5e-20 Identities = 137/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 6805 GTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTA 6864 |||| |||| |||| | || ||||||| | ||||| ||||||||| || | ||| Sbjct 741567 GTTACCTGTTGCTTTAATGGTTCAATATGATTGAGATAAACATGAGCATCGCCAATTGTA 741626 Query 6865 TGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCA 6924 || || || || |||||||||| || | | |||||||| | ||||| ||| | ||| Sbjct 741627 TGGATGAAATCGCCTGGTTTCAAGCCAGTAACATGAGCAATCATGTATGTCAATGAAGCA 741686 Query 6925 TAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGA 6984 || || | ||| || ||||||||||| |||||||| ||||| | ||||| ||||| Sbjct 741687 TAGCTTGCAATATTGAATGGTACACCTAAACCCATATCGGCTGACCGCTGATACAATTGA 741746 Query 6985 CAAGATA 6991 || |||| Sbjct 741747 CATGATA 741753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595689700410000