Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq17719 154 8e-33 >seq17719 Length=915897 Score = 154 bits (170), Expect = 8e-33 Identities = 196/270 (73%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 3875 GGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAA 3934 ||||| |||||||||||| || ||||| ||| ||||||||| | ||||| | ||| Sbjct 281370 GGTGTCCATTTTATGATGAGCGATGGTGGATTCAGCGTTGAGGGTAACGAAAACGTCCAA 281429 Query 3935 GAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACGA 3994 ||||| |||||||||| ||||||| ||||||||| | | ||| | |||| | ||| Sbjct 281430 GAAATTTTATCGAAAAGATTGTATTTATGTCAATGTCTGACTGCCCTATCGATCGTTCGA 281489 Query 3995 ATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTA 4054 ||| |||| ||| | ||| | ||||| | ||||||||| ||||||| || | Sbjct 281490 GCAAATGGACATTTTGTCACCAAGCTATTCGACACATTTACACCATTTAGTGTAGGACTC 281549 Query 4055 GTGTATTTGATGTATAGATCTTTTAATCGTATTTGTATTTTCAAACCACATTCATCGCGA 4114 | ||| | |||| || || ||||| | ||||||||| |||| ||| | || ||| Sbjct 281550 ATTTATCTCATGTTTAAATGCTTTAAACAAATTTGTATTGTCAAGCCAAACACAAGCCGA 281609 Query 4115 CCGGCCAATTCTGAAAGATATTTGGTGTGT 4144 || || || || ||| |||||||||| ||| Sbjct 281610 CCAGCAAACTCCGAACGATATTTGGTTTGT 281639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276471107085925