Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq305 125 4e-24 seq263 114 7e-21 seq16759 113 2e-20 seq304 111 8e-20 seq302 111 8e-20 >seq305 Length=982855 Score = 125 bits (138), Expect = 4e-24 Identities = 89/102 (87%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||||| | ||| || ||||||| | |||||||||| |||||||||| |||||||| Sbjct 205104 GAAATAAAAAATGAAAAAAAAAT--ATTTGGCCCATGGGAGGATCGAACTCGCGACCTTC 205161 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||||||||||||||||||| Sbjct 205162 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 205203 Score = 114 bits (126), Expect = 7e-21 Identities = 77/86 (90%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 205699 AAAAAAT--ATTTGGCCCATGGGAGGATCGAACTCGCGACCTTCGCGTTATTAGCACGAC 205642 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 205641 GCTCTAACCAACTGAGCTAATGGGCC 205616 >seq263 Length=11292355 Score = 114 bits (126), Expect = 7e-21 Identities = 79/88 (90%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 3069682 AAAAAA--AAATATGGCCCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGA 3069625 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| ||||||||||||||||||||| Sbjct 3069624 CGCTCTAACCAACTGAGCTAATGGGCCG 3069597 >seq16759 Length=2297 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||||| ||||||||| |||||||||| |||||||||||||||||||||| Sbjct 1718 ATAAAAAATA----TGGCCCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACG 1663 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| ||||||||||||||||||||| Sbjct 1662 ACGCTCTAACCAACTGAGCTAATGGGCCG 1634 >seq304 Length=1979033 Score = 111 bits (122), Expect = 8e-20 Identities = 76/86 (88%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1753719 AAAAAAT---ACTGGCCCATGGGAGGATCGAACTCGCGACCTTCGCGTTATTAGCACGAC 1753775 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 1753776 GCTCTAACCAACTGAGCTAATGGGCC 1753801 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1754517 AAAAAAT--ATGTGGCCCATGGGAGGATCGAACTCGCGACCTTCGCGTTATTAGCACGAC 1754460 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 1754459 GCTCTAACCAACTGAGCTAATGGGCCG 1754433 >seq302 Length=725637 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 385039 TGGCCCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 384980 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 384979 TGAGCTAATGGGCCG 384965 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 385682 AAAAAAT--ATGTGGCCCATGGGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 385739 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||||||||| Sbjct 385740 GCTCTAACCAACTGAGCTAATGGGCCG 385766 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261413200035100