Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_006548.1 Length=38439 Score E Sequences producing significant alignments: (Bits) Value seq12839 100 7e-17 seq6724 98.7 2e-16 >seq12839 Length=546 Score = 100 bits (110), Expect = 7e-17 Identities = 261/395 (66%), Gaps = 10/395 (3%) Strand=Plus/Plus Query 13775 GAGCTGCCGATCCAGTACGTCCGCCGCGAGGACTATATCCGCGGCCAGAGCGTGATCGAG 13834 ||| |||| | || |||||||||||||| |||| ||| || | | ||||| Sbjct 155 GAGATGCCTTTGCACTACGTCCGCCGCGAAGACTGGGCGCGCAATCAATCCATTATCGAA 214 Query 13835 GCGAAGCTCGACGGTTTGGCCGTGAAGCTGGAAAACGCGCAGCTGCGCAGTCTGA-TGGG 13893 || |||||||| || |||| | ||| | |||||||| || || | || || | | Sbjct 215 GCCAAGCTCGATGGCCTGGCGCTCAAGTTAGAAAACGCTCAACT-CAAAG---GACTACG 270 Query 13894 AGCAAAAAATGCAAATTGACCTGGCCAAGACCCGGCGCGAAGCCCTGCGCTGGCTGATTC 13953 || || | ||||| | |||||| | || || ||| ||||||||||| || Sbjct 271 CCCA-----TGAACATTGATCCAGCCAAGGCGCGCCGGGAATCCCTGCGCTGGTACATCA 325 Query 13954 TACTGACCCTGAACAATGCTCGGCCGGTGGGCGCCTACGAGGGGCCGGTCCTCTCGGTCG 14013 | |||||||| || | | || || || | | |||| | | ||| || ||| | Sbjct 326 TCCTGACCCTTAATACATCGCGCCCAGTCGATCCGCACGAAGCGGTGGTGCTGTCGACCA 385 Query 14014 CACAGAGCGAGTACCCCGACGCCACACCGCTGGAGATCCGCCGCGAGCTGGACTACTTGG 14073 ||| || | ||||||||||| |||||| | || ||||| ||||||||| ||| Sbjct 386 TCCAGGGCATCTTTCCCGACGCCACCGGCCTGGAGCTGCGGCGCGAACTGGACTACCTGG 445 Query 14074 CCGACCGTGACCTGGTGACCTTGGTCAAGGAACCATCCGGCAAGTGGTTCGCCGATTTGA 14133 |||||||| ||||| || || |||| | || |||| ||| | || | ||| Sbjct 446 CCGACCGTAGCCTGGCCACTCTGAACAAGCAGCCCAGCGGCGTATGGATTTGCGGTCTGA 505 Query 14134 CCCGGTATGGCACTGACGTCGCCGAGTACACCATC 14168 | | || ||| |||||||| || ||||||||| Sbjct 506 CGCACTACGGCGTCGACGTCGCGGAATACACCATC 540 >seq6724 Length=978 Score = 98.7 bits (108), Expect = 2e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 12527 AAGCTGGCCTCGGCATCCGGCGCCGACCAGCTGGCCTGGTTCGATTCCGTCGAGCGCTTC 12586 ||| |||| ||||| || ||||| | |||| |||||||| ||||||| ||||| | | Sbjct 3 AAGTTGGCATCGGCTAAAGGGGCCGATCCGCTGACCTGGTTCAATTCCGTTGAGCGATAC 62 Query 12587 AACGCCGGGCGCTCGGCCGCCAACTTCCGCGAGAACCGCAACTACCCGCGCCTCATCCTG 12646 ||||| || ||||||||||| |||| || |||||| | ||||||||||| ||||| Sbjct 63 AACGCGGGCCGCTCGGCCGCAGCCTTCAAGGAAAACCGCCAATACCCGCGCCTGATCCTT 122 Query 12647 CTTCGCT 12653 | |||| Sbjct 123 TTGCGCT 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122847485149950