Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq193 138 1e-27 seq17930 122 8e-23 seq28 116 3e-21 seq6000 89.7 5e-13 >seq193 Length=1219868 Score = 138 bits (152), Expect = 1e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| ||||| |||||||| ||||| ||||| | |||||| ||||||| ||| | Sbjct 521699 CGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCA 521758 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||| ||| |||| || || | || || ||||| ||||| ||||||||| Sbjct 521759 TCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGGAATTCCTTCTTTG 521818 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| | | ||||| | | ||||| || | |||||| Sbjct 521819 TCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACCTCCAAAGTGATG 521878 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 |||||||| || | ||||||||||| || |||||| || Sbjct 521879 GTTTTTCCGGTCAATGTTTTCACAAAAATTTGCATGGTT 521917 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| ||||| |||||||| ||||| ||||| | ||| || ||||||| ||| | Sbjct 521015 CGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTGTAGTCGCTCAAAGTACGACCA 521074 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||| || |||| || |||| ||| |||||||| |||||||| |||||| Sbjct 521075 TCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCCTCTTTG 521134 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| ||| ||| ||||| | | || || || | |||||| Sbjct 521135 TCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGATG 521194 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| | ||||| ||||| || ||||| Sbjct 521195 GTTTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521229 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| || ||||||||||| | ||||| ||||||| || | ||| ||| Sbjct 520079 ACCAAATGCAATGTTGATTCCTTTTGGATATTATAGTCGCTCAATGTACGGCCATCTTCC 520138 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | || || ||| |||| || || | || |||||||| ||||||||||||||||| | Sbjct 520139 AATTGCTTGCCGGCAAAAATCAAACGCTGTTGATCTGGCGGAATACCTTCTTTGTCTTGG 520198 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| ||||||||| ||| ||||| | | || || || | |||||||||||| Sbjct 520199 ATTTTAGCCTTGACGTTTTCGATGGTGTCTGATGGTTCAACCTCCAAAGTGATGGTTTTT 520258 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | ||||| || || || ||||| Sbjct 520259 CCGGTCAATGTTTTGACGAAAATTTGCAT 520287 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| ||||| |||||||| ||||| ||||| | |||||| ||||||| ||| | Sbjct 520806 CGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCA 520865 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||| || |||| || |||| ||| |||||||| ||||||||||||||| Sbjct 520866 TCTTCCAATTGTTTACCAGCAAAAATCAATCGTTGTTGATCTGGTGGAATACCTTCTTTG 520925 Query 94913 TCATAAATTTTTGCCTTGAC 94932 || | || || |||||||| Sbjct 520926 TCTTGGATCTTGGCCTTGAC 520945 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| || ||||| ||||| | |||||| ||| | |||| || || Sbjct 520584 ACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGGATAAAGTGCGACCGTCTTCT 520643 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | |||||| ||| | || || || | || |||||||| ||||||||||||||||| | Sbjct 520644 AACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 520703 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||||| | | ||||| | | || || || | |||||||||||| Sbjct 520704 ATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTTTTT 520763 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||||| |||||||| ||||| Sbjct 520764 CCAGTCAATGTTTTGACAAAGATTTGCAT 520792 Score = 116 bits (128), Expect = 3e-21 Identities = 157/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| ||||| ||||| || |||||||| || | ||| || ||||||| ||| || Sbjct 521243 CGCAAGACCAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCGCTCAA--TGTACGAC 521300 Query 94853 --TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 || |||| ||||| ||| | || || || | || |||||||| ||||||||||||| Sbjct 521301 CGTCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTT 521360 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | || || ||||| ||| ||| ||||| | | || || || | |||| Sbjct 521361 TGTCTTGGATCTTGGCCTTAACGTTTTCGATGGTGTCTGATGGTTCAACTTCCAAAGTGA 521420 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| | ||||| ||||| || ||||| Sbjct 521421 TGGTCTTGCCAGTCAATGTTTTGACAAAAATTTGCAT 521457 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| || ||||| ||||| | |||||| ||||||| ||| || || Sbjct 521477 ACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGCTCAAAGTACGACCGTCTTCT 521536 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | |||||| ||| | || || || | || |||||||| ||||||||||||||||| | Sbjct 521537 AACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCTTTGTCTTGG 521596 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||||| | | ||||| | | || || || | |||||||| || Sbjct 521597 ATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCCAATGTGATGGTCTTG 521656 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||||| |||||||| ||||| Sbjct 521657 CCAGTCAATGTTTTGACAAAGATTTGCAT 521685 >seq17930 Length=2109152 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| ||||| || || || ||||||||||| | || |||||| || || | | Sbjct 1835522 CGCAATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCGGACAATGTACGGCCA 1835463 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||| ||| |||| || || | ||| || ||||| ||||| ||||||||| Sbjct 1835462 TCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTGGAATGCCTTCTTTG 1835403 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||| |||||||| ||| ||||| | | ||||| |||| ||||| Sbjct 1835402 TCTTGGATTTTAGCCTTGACATTTTCGATTGTGTCGGATGGCTCGACTTCAAGTGTGATA 1835343 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || |||||||| || || || ||||| Sbjct 1835342 GTCTTGCCGGTTAGAGTTTTAACGAAAATTTGCAT 1835308 >seq28 Length=2173237 Score = 116 bits (128), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| || | || ||||||||||| | ||| || ||| | | ||| || ||| | Sbjct 1269987 ACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCG--GACAATGTACGACCATCTT 1269930 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| ||||| || |||||||||| | ||| |||||||| ||||| ||||| ||||| | Sbjct 1269929 CCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCTT 1269870 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||||| |||||||| ||| |||||| | | ||||| || | ||||| || | Sbjct 1269869 GGATTTTGGCCTTGACATTTTCGATAGTGTCTGACGGTTCGACTTCGAGAGTGATAGTCT 1269810 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 | || || || ||||| || || ||||||||| || Sbjct 1269809 TACCCGTGAGGGTTTTAACGAAAATCTGCATGGTT 1269775 >seq6000 Length=1279 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 94767 TAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCA 94826 |||||||||| ||| || | | ||||| ||||||||||| || ||||||||||| | Sbjct 1138 TAAAATTTTATTTTCCGCCACGAAGACGCAAGACCAAGTGCAATGTTGATTCCTTTTGGA 1197 Query 94827 CGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 ||||| ||||||| || | ||| |||| || || ||| |||| || || | | Sbjct 1198 TATTATAGTCGCTCAATGTACGGCCATCTTCCAATTGCTTGCCGGCAAAAATCAAACGCT 1257 Query 94887 GCTGATCTGGAGGAATACCTTC 94908 | |||||||| || |||||||| Sbjct 1258 GTTGATCTGGTGGTATACCTTC 1279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448154050911000