Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq12183 363 7e-96 seq22081 136 2e-27 seq11285 118 4e-22 >seq12183 Length=517 Score = 363 bits (402), Expect = 7e-96 Identities = 325/404 (80%), Gaps = 5/404 (1%) Strand=Plus/Plus Query 9626 TCGTTCACCGCCGCCCCTTCGCTGTGGTGCAGCAGGGCGATCGCCAGGTAGTCGGTCATG 9685 ||| |||||||| | ||||| ||||||||||||||||| || |||||||||||||||||| Sbjct 5 TCGGTCACCGCCACGCCTTCACTGTGGTGCAGCAGGGCAATGGCCAGGTAGTCGGTCATG 64 Query 9686 CCCTGCTGGTAGTGGGCGAACAGTACGTAGCCGCCGGTGGAGAGGTTGGACTCTTCCATC 9745 || |||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||| Sbjct 65 CCTTGCTGGTAGTGGGCAAACAGCACGTGGCCGCCGGTGGAGAGGTTGGACTCTTCCATC 124 Query 9746 AGCTTCTGCAGGTGTTCCACCGCCTCGCGGCTGAACCCCACGAAGTCGCGGTCGCCTTCC 9805 || || ||||| ||||| || || |||||||||| ||| || || | || || Sbjct 125 AGTTTTTGCAGATGTTCGACGGCGGTGCGGCTGAACGTGGTGAAATCCTGGCCACCCTCG 184 Query 9806 AGGTACTCGCCGAGCCAGCCGCTGAACGGGTAGGCCCCGGACTCGCCCTGGAAGAAGCCC 9865 | || || | ||||||||||||||||| || ||||| ||| | |||||||| ||| Sbjct 185 AAATATTCCTTCAACCAGCCGCTGAACGGGTGCGCGCCGGATTCGGCATGGAAGAAACCC 244 Query 9866 CAGGCCTTG---TTCTTGGCGTTGTAGCTTTCGTTGAGGTCGGCCAGCAGGTTCTCGATG 9922 ||||||||| | |||||||||||||| |||||||||||||| |||| |||||||||| Sbjct 245 CAGGCCTTGCCTTGTTTGGCGTTGTAGCTCTCGTTGAGGTCGGCAAGCATGTTCTCGATG 304 Query 9923 ACCTGGGAGTTACCCAGCTCAGCGTCGCGCGCATGG-AGCACGGTCGGGGTGCCGTCGGG 9981 | || | | ||||| | |||||| || ||| || || | || ||||||||||| Sbjct 305 GCGGCCGACTCGGCAAGCTCGGAGTCGCGGGCGTGGCAGAACTGCGGGTGTGCCGTCGGG 364 Query 9982 CTTCTTGTCGATCAGGTGGATGATGGAATGGCGGATAGGCATGG 10025 || |||||||||||||||| |||| |||| ||||| ||||||| Sbjct 365 -TTTTTGTCGATCAGGTGGACGATGCAATGACGGATCGGCATGG 407 >seq22081 Length=711 Score = 136 bits (150), Expect = 2e-27 Identities = 362/546 (66%), Gaps = 28/546 (5%) Strand=Plus/Plus Query 10068 TTCTTCGCCGCCCAGTGCTACCAGCAGCTCGGGGATGAATTGCTGGAAGGTGAGCATCAT 10127 |||||||||||| || ||| | | || | | || | ||| | |||||| |||||||| Sbjct 179 TTCTTCGCCGCCGAGGGCTTCGATCAACGCTGGCAGGAAGTCGCCGAAGGTCAGCATCAT 238 Query 10128 CAGGACGAAGCTGGCGTCGGCCTGTGCGAACTCGTCGGAATCCTTACCAGCGTCGTCCAG 10187 |||| ||||||||||| || | | || || | |||| |||| | Sbjct 239 CAGGGTAAAGCTGGCGTCCAGTTGGCCCAG------GGCCTCTTCACCACCGTCCTGTTC 292 Query 10188 TGCCCGCTCCTGCAGCAGGTCGTCGAAGCGGAGGC---TGCGGATCACCAGACCCTCGTC 10244 |||| | || ||||||||||| ||||| |||| || | ||| | ||||| Sbjct 293 TGCCTGGTCTTGCAGCAGGTCTTCGAACTTCAGGCGCTTGACGGTCATCTTG---TCGTC 349 Query 10245 GAGTACGAAGTAGAGGTCTTTCTTCCAGGCGAGAGCGAGCTTGGTGACGCTCTTACCTGA 10304 ||| | |||| | || | | || |||||| || | |||| ||| ||| ||| || | Sbjct 350 GAGCATGAAGGACAGTTTGTCCTGCCAGGCCAGGGACAGCTGGGTCACGACCTTGCCGGT 409 Query 10305 GTCGAGGTGCTGGCGGATCACGTCGCTGGTCAGGTCCTGGTGTTTG--GCG-GTGATGCT 10361 | |||||| | |||| |||||| ||||||||||||| | ||| ||| ||||| Sbjct 410 GGTCAGGTGCAGCTGGATTTCGTCGCCGGTCAGGTCCTGGCGCTTGCAGCGCACGATGCC 469 Query 10362 GCCTTGCTCGTCGGTGTCGCGGAGCAGGGCGCCGTCGCACAGCCAGAAGTCGCCACCCGC 10421 || | |||| |||||||| |||| ||| ||| |||| |||| | | |||| Sbjct 470 ACCGTCTTCGTGGGTGTCGC---GCAGTTCGCATTCGTCCAGCACGAAGAAGTCGTCCGC 526 Query 10422 ATTAGTTTCTTGGCTTCGCAGCCACTCGGTCATGGTTGCCGTCGGCGAAACCTTGGTTGC 10481 | ||||| || | | | ||| ||||||||| || ||||| | |||| | Sbjct 527 A--GCTTTCTGGGTCTTG-ACCCAGTCGGTCATGACGGCGGTCGGTGCGGTCTTGACCGT 583 Query 10482 GATCGGTCGGACGGGGAGAGAGCCCAGGGCTTCGCGCAAGGTCGACAGCAGATCCTCGGC 10541 | || || || || || ||||| | | ||||||||| ||| || ||||| || ||||| Sbjct 584 CAGTGGACGCACCGGCAGCGAGCCGATGACTTCGCGCAGGGTGGAGAGCAGGTCTTCGGC 643 Query 10542 GGCCTTCGCCGTGGCGG---TGTCCACGATCACCAGGCCTTGCGCCGGCATGATTGCGGC 10598 | |||| |||||| || ||| ||||| ||| || |||| ||| ||||| Sbjct 644 GCGTTTCGGGCTGGCGGAGTTGACCAGGATCA----GCCCTGTTTCGGCGCGATGGCGGC 699 Query 10599 GAAGGT 10604 |||||| Sbjct 700 GAAGGT 705 >seq11285 Length=711 Score = 118 bits (130), Expect = 4e-22 Identities = 186/262 (71%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 62475 AGAAGCGTCCATGCGCCACTTTCTCGACCCGAGCGTTGATCGGCGCCGCGCGGTCCCTAG 62534 ||||| | || || || |||||||||||||| || ||||| || || || |||||| | | Sbjct 363 AGAAGGGGCCGTGGGCGACTTTCTCGACCCGGGCATTGATTGGGGCTGCTCGGTCCTTGG 422 Query 62535 CCCAGAAGGGCCGCCAGCCCCATCGAATCGGCTGAGC-TACGAGCGCATCGCCTTCGAGC 62593 ||||| |||||||||||||| || | | | | || | | ||| |||||||| | Sbjct 423 CCCAGTGCGGCCGCCAGCCCCAACGGACCAGGTCGGCGTGCAAGCTG-TCGCCTTCCTGA 481 Query 62594 CGTAGCGTCGTCACGGCCGT--CGATGGCGCAACGTTGTAGCGCTCTGACTGTTCGCCGA 62651 | | | | || || |||||| || ||||||| ||||| || ||||| | Sbjct 482 TGGAAGAGGGCGA--GCTGTTGCGATGGAGCGGCGTTGTACCGCTCCAGTTGATCGCCCA 539 Query 62652 CGAGGTTGACCAGGACGTTGGGCATCGACAGCGCGTCGACGAACTCGTGCATGCCGGTGT 62711 || | |||||| | |||||||||| |||||| | ||||| || || |||||||||| Sbjct 540 CGGTGCTGACCATGGCGTTGGGCATGCTCAGCGCAGCCACGAAGTCATGGATGCCGGTGT 599 Query 62712 ACTGGCTGAGCCTTCCGCACAT 62733 | ||| || | ||||||||| Sbjct 600 ATTGGGATAGTCGTCCGCACAT 621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208437006969100