Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq20205 210 3e-50 seq182 208 1e-49 seq16377 206 4e-49 seq180 206 4e-49 seq6489 199 6e-47 seq186 196 8e-46 seq4589 179 6e-41 seq19650 120 5e-23 >seq20205 Length=723427 Score = 210 bits (232), Expect = 3e-50 Identities = 208/269 (77%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | | | || ||||| |||||||| ||||| |||||||| || Sbjct 270877 CGCCAAACGTCATCGTAAAGTTTTGCGTGATAATATCCAAGGCATCACAAAGCCAGCAAT 270818 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||||||||||||||| || || ||| | ||||||||| | || ||||| | Sbjct 270817 TCGTCGATTGGCTCGTCGTGGTGGTGTAAAACGTATTTCTGGATTGATTTACGAAGAAAC 270758 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||||||||| | || || | | || |||| ||||||| || || ||||| Sbjct 270757 CCGTGGTGTTTTGAAAGTTTTTCTGGAAAATGTAATCCGTGATGCTGTCACATACACCGA 270698 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || ||||||||||| |||||| | |||||| | ||||||||||||||||||||||| Sbjct 270697 ACATGCAAAACGTAAGACAGTCACCGCTATGGATGTTGTCTATGCATTGAAACGTCAAGG 270638 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || ||||| || |||||| Sbjct 270637 ACGTACATTGTACGGTTTCGGCGGTTAAT 270609 >seq182 Length=759466 Score = 208 bits (230), Expect = 1e-49 Identities = 211/272 (78%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | | | || |||||||||||||||||||| || ||||| || Sbjct 698972 CGCCAAACGTCATCGTAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAACCAGCCAT 699031 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| | |||||||||||||| ||||| ||| | ||||| ||| | || ||||| | Sbjct 699032 TCGTCGATTAGCTCGTCGTGGTGGTGTCAAACGTATTTCTGGTTTGATTTACGAAGAAAC 699091 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCG 16610 ||| | |||||| || | ||||| | | || |||| ||||||| || || || |||| Sbjct 699092 TCGCGGTGTTTTAAAAGTTTTCCTAGAAAATGTAATCCGTGATGCTGTTACA-TACACCG 699150 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| |||||||||||||||||| | |||||| | || |||||||||||||| |||| Sbjct 699151 AACACGCAAAACGTAAGACTGTCACCGCAATGGATGTTGTTTATGCATTGAAACGACAAG 699210 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 | || | | |||||||| || ||||| || Sbjct 699211 GACGCACATTGTATGGTTTCGGCGGTTAAACT 699242 >seq16377 Length=4452 Score = 206 bits (228), Expect = 4e-49 Identities = 206/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | | | || |||||||||||||| || || || ||||| || Sbjct 1110 GCCAAGCGTCATCGCAAAGTTTTGCGTGATAACATCCAAGGTATTACGAAACCAGCCATT 1169 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||||||||||||||| || || ||| ||||||| ||| |||| ||||| | | Sbjct 1170 CGTCGATTGGCTCGTCGTGGTGGTGTAAAACGTATCTCTGGCTTGATCTACGAAGAAACT 1229 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||| | ||| | | | ||||||| ||||| || |||||| || Sbjct 1230 CGTGGTGTGCTGAAAGTTTTCTTGGAAAATGTTATCCGAGATGCAGTCACCTATACGGAA 1289 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || |||||||| ||||| || || |||||||| |||| |||||||||||||| ||||| Sbjct 1290 CATGCTAAACGCAAGACCGTAACAGCCATGGATGTCGTTTATGCATTGAAACGACAAGGA 1349 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| ||| ||||| Sbjct 1350 CGTACATTGTACGGTTTCGGAGGTTAA 1376 >seq180 Length=2402523 Score = 206 bits (228), Expect = 4e-49 Identities = 208/268 (78%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | | | || |||||||||||||||||||| || ||||| || Sbjct 2096792 GCAAAACGTCATCGTAAAGTTTTACGTGATAACATCCAAGGAATCACAAAACCAGCCATT 2096733 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||||||||||||||| ||||| ||| | ||||| ||| | || ||||| | | Sbjct 2096732 CGTCGATTGGCTCGTCGTGGTGGTGTCAAACGTATTTCTGGTTTGATTTACGAAGAAACT 2096673 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGA 16611 || | |||||| || | ||| | | | ||| |||| ||||||| || || || ||||| Sbjct 2096672 CGCGGTGTTTTAAAAGTTTTCTTAGAAAACGTAATCCGTGATGCTGTTACA-TACACCGA 2096614 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| |||||||||||||||||| | |||||| | || |||||||||||||| ||||| Sbjct 2096613 ACACGCCAAACGTAAGACTGTCACCGCAATGGATGTTGTTTATGCATTGAAACGACAAGG 2096554 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| || ||||| Sbjct 2096553 ACGCACATTGTACGGTTTCGGCGGTTAA 2096526 Score = 206 bits (228), Expect = 4e-49 Identities = 210/271 (77%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | | | || |||||||||||||||||||| || ||||| || Sbjct 2385112 GCAAAACGTCATCGTAAAGTTTTACGTGATAACATCCAAGGAATCACAAAACCAGCCATT 2385171 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||||||||||||||| || |||||| | ||||| ||| | || ||||| | | Sbjct 2385172 CGTCGATTGGCTCGTCGTGGTGGTGTTAAGCGTATTTCTGGTTTGATTTACGAAGAAACT 2385231 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGA 16611 || | |||||| || | ||||| | | || |||| ||||||| || || || ||||| Sbjct 2385232 CGCGGTGTTTTAAAAGTTTTCCTAGAAAATGTAATCCGTGATGCTGTTACA-TACACCGA 2385290 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| |||||||||||||||||| | |||||| | || |||||||||||||| ||||| Sbjct 2385291 ACACGCCAAACGTAAGACTGTCACCGCAATGGATGTTGTTTATGCATTGAAACGACAAGG 2385350 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || ||||| || ||||| || Sbjct 2385351 ACGCACATTGTACGGTTTCGGCGGTTAAACT 2385381 >seq6489 Length=1272 Score = 199 bits (220), Expect = 6e-47 Identities = 205/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | | | || ||||| |||||||| || || || ||||| || Sbjct 484 CGCCAAACGTCATCGTAAAGTTTTGCGTGATAATATCCAAGGCATTACAAAACCAGCCAT 543 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||||||||||||||| || || ||| | ||||| ||| |||| ||||| | Sbjct 544 TCGTCGTTTGGCTCGTCGTGGTGGTGTTAAACGTATTTCTGGTTTGATCTACGAAGAAAC 603 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||||||||| |||| | | | || |||| |||||| || || ||||| Sbjct 604 CCGCGGTGTTTTGAAAGTCTTTTTGGAAAATGTCATCCGTGATGCAGTCACTTACACCGA 663 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||||||||||| |||||| | |||||| | ||||||||||||||||||||||| Sbjct 664 ACACGCAAAACGTAAGACAGTCACCGCTATGGATGTTGTCTATGCATTGAAACGTCAAGG 723 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| || ||||| Sbjct 724 ACGTACATTGTACGGTTTCGGCGGTTAA 751 >seq186 Length=1299905 Score = 196 bits (216), Expect = 8e-46 Identities = 202/262 (77%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | | | || |||||||||||||||||||| || ||||| || Sbjct 1210243 CGCCAAACGTCATCGTAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAACCAGCCAT 1210302 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||||||||||||||| || || ||| | ||||| ||| |||| ||||| | Sbjct 1210303 TCGTCGATTGGCTCGTCGTGGTGGTGTTAAACGTATTTCTGGCTTGATCTACGAAGAAAC 1210362 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC-TTTCCACTATACCG 16610 |||| ||||||||| | ||| | | | || |||| |||||| || || || |||| Sbjct 1210363 CCGTGGTGTTTTGAAAGTTTTCTTGGAAAATGTCATCCGTGATGCAGTTACA-TACACCG 1210421 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| ||||||||||| |||||| | |||||| | || |||||||||||||| |||| Sbjct 1210422 AACACGCAAAACGTAAGACCGTCACCGCAATGGATGTTGTTTATGCATTGAAACGACAAG 1210481 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | || ||||| || Sbjct 1210482 GACGCACATTGTACGGTTTCGG 1210503 Score = 194 bits (214), Expect = 3e-45 Identities = 191/244 (78%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||| | | | | || |||||||||||||||||||| || ||||| || Sbjct 1204785 CGCCAAACGTCATCGTAAAGTTTTGCGTGATAACATCCAAGGAATCACAAAACCAGCCAT 1204844 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| |||||||||||||||| || || ||| | ||||| ||| |||| ||||| | Sbjct 1204845 TCGTCGATTGGCTCGTCGTGGTGGTGTTAAACGTATTTCTGGCTTGATCTACGAAGAAAC 1204904 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC-TTTCCACTATACCG 16610 |||| ||||||||| | ||| | | | || |||| |||||| || || || |||| Sbjct 1204905 CCGTGGTGTTTTGAAAGTTTTCTTGGAAAATGTCATCCGTGATGCAGTTACA-TACACCG 1204963 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| ||||||||||| |||||| | |||||| | || |||||||||||||| |||| Sbjct 1204964 AACACGCAAAACGTAAGACCGTCACCGCAATGGATGTTGTTTATGCATTGAAACGACAAG 1205023 Query 16671 GCCG 16674 | || Sbjct 1205024 GACG 1205027 >seq4589 Length=4539 Score = 179 bits (198), Expect = 6e-41 Identities = 185/242 (76%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | | | || |||||||| ||||| ||||| || ||||| || Sbjct 912 GCCAAACGTCATCGTAAAGTTTTGCGTGATAACATTCAAGGTATCACAAAACCAGCCATT 971 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| | || ||||||||||| || || ||| | ||||| ||| | || || || | | Sbjct 972 CGTCGATTAGCCCGTCGTGGTGGTGTGAAACGTATTTCTGGTTTGATTTACGATGAAACT 1031 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||||||||| | || | | | |||| ||| ||||||| | || ||||| Sbjct 1032 CGCGTTGTTTTGAATTTTTTTTTGGAAAACGTTGTCCGTGATGCTGTTACGTACACCGAA 1091 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| |||||||||||||||||| |||||||| |||| |||||||||||||| ||||| Sbjct 1092 CACGCAAAACGTAAGACTGTCACCGCCATGGATGTCGTTTATGCATTGAAACGACAAGGA 1151 Query 16673 CG 16674 || Sbjct 1152 CG 1153 >seq19650 Length=750 Score = 120 bits (132), Expect = 5e-23 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 16539 TCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTT 16598 |||| ||||| | || | ||||||||| |||| | | | || |||| |||||| Sbjct 2 TCTACGAAGAAACCCGCGGTGTTTTGAAAGTCTTTTTGGAAAATGTCATCCGTGATGCAG 61 Query 16599 TCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCAT 16658 || || ||||| ||||| ||||||||||| |||||||| |||||| | |||||||||| Sbjct 62 TCACATACACCGAACACGCAAAACGTAAGACAGTCACCTCTATGGATGTTGTCTATGCAT 121 Query 16659 TGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||||||||||| |||| | || ||||| || ||||| Sbjct 122 TGAAACGTCAAGGACGTACATTGTACGGTTTCGGCGGTTAA 162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79052822336175