Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq318 104 4e-17 >seq318 Length=2229815 Score = 104 bits (114), Expect = 4e-17 Identities = 249/373 (67%), Gaps = 8/373 (2%) Strand=Plus/Minus Query 193888 TGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAGTTCTG 193947 |||||| | |||||| | | |||||||||||| | ||| | ||| | || Sbjct 709958 TGTATGCATTTTGGATTGTTACAAATTATCGTGAGGCCTATAATATGTTTGCTTGCAATG 709899 Query 193948 GTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGATTA 194007 | ||| | || ||||||||||| || || | ||||| | ||||| || ||||| || | Sbjct 709898 GAATTTTGTTTAATCACGAATCACCGCGACGTGGTGAAAATTTTGTTACGCGTAAAATAA 709839 Query 194008 CACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGT-AATCTT 194066 | | | | | | || ||| || || | | || ||| |||| ||| | Sbjct 709838 CGCGATCTGTTGCCAAAATCAAA-TTAAATCAAATTGAATCGTTTGAATTGGGCAATTTG 709780 Query 194067 AATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTTG 194126 || | || | |||||||| || || || ||||||||||||||||||||| | |||||| Sbjct 709779 GATTCAAAACGTGATTGGGGCCATGCCAAAGATTATGTTGAAGCGATGTGGCTCATGTTG 709720 Query 194127 CAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAGTATTCTGTTAGAGAC 194186 || || ||||| | |||| ||||||||| || |||||| | | |||| |||| Sbjct 709719 CAGCAAACAGAACCACAGGATTTTGTGATTGCAACTGGTGAAACGCACAGTGTTCGAGAA 709660 Query 194187 TTTGTGAATGAAGCAGCA---CCCTATTTTGGTTTTAAACTAGAATGGATGGGTGAAGGT 194243 ||||| ||| || ||| | | | ||| | | ||||||||||| |||||| Sbjct 709659 TTTGT---TGAGGCCGCATTTGCAGTTATCGGTCGACAGATCGAATGGATGGGAGAAGGT 709603 Query 194244 GAAGACGAGATTG 194256 | | | ||||||| Sbjct 709602 GTAAATGAGATTG 709590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807308138581000