Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq317 244 1e-59 >seq317 Length=2337800 Score = 244 bits (270), Expect = 1e-59 Identities = 545/809 (67%), Gaps = 31/809 (4%) Strand=Plus/Minus Query 21205 TTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATT 21264 |||||| || ||||| || || |||| ||||| || ||||||||| | ||||||||| Sbjct 1453404 TTTTTCAAAGAAATTAGTTTTGCCTTGTAATGAAATGTTTTCCATAAATTTAAATGGATT 1453345 Query 21265 TTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTC 21324 | | |||| | | || |||| ||| || || | ||| || |||||||| Sbjct 1453344 CTTGACCATGAATAATGGTTCGCAGCCCAATTCGCTCAACAAACGATCGGCAACAAATTC 1453285 Query 21325 TATATATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGT 21384 || || |||||| |||||||||| || | || | || || | || || Sbjct 1453284 AATGTACGTACACATATCAGCACAATTCATGCCCAACATTGAAACTGGCAATGCAACCGT 1453225 Query 21385 CAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACT 21444 ||||| ||||| || || |||||| |||| ||||| | || | || || Sbjct 1453224 TAAAAATTCCTTTTCAATGCGAACCGCTTCAGCAATAATATTG-----CGTACACGTTCT 1453170 Query 21445 AGGG--GGAT-----ACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAAC 21497 | | || | |||| | | ||||||||| |||||||||||||||||||||| | Sbjct 1453169 TGTGATGGTTTTTGTACAACA--TATTTAAACATTAAACATGCAAAATCACAATGCATGC 1453112 Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557 | ||||| | ||||||||||| |||||||||||||||||||||| || | |||| Sbjct 1453111 CCTCATCACGTGAAATTAATTCATTGGAAAATGTTAAACCGGGCATTAGACCACGTTTTT 1453052 Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGA-AAAGAAAATGCCCTCAACGGCAGCAAAT 21616 | |||||||| || || ||||| ||| | | ||| ||||| || ||||| || |||||| Sbjct 1453051 TCAACCAAAAAATAGATGCAAA-GCTACCGCTAAAAAAAATCCCTTCAACAGCTGCAAAT 1452993 Query 21617 GCAACTAATCGTTCACCGTATGTAG-ATTCTTTATCCAATATCCATTTTTCTGCCCATTT 21675 ||||| | |||||||| |||| | | || | | | ||||||| | |||||| | Sbjct 1452992 GCAACAACACGTTCACCAAATGTGGCCGTTTTGCTGCCA-ATCCATTGTAATGCCCAATC 1452934 Query 21676 TGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT---TAAAAGATGAtttttttC 21732 ||||| | ||||| ||| | || || || || || |||| || | || ||| Sbjct 1452933 GGCCTTCTTTTTAACACATGGCAACGTTTCGATGGCATTAAACAAAAAATTACGTTCTTC 1452874 Query 21733 ATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTC 21792 ||| || || || ||| ||||||||||| || | |||||| Sbjct 1452873 ATCGTCA-CGTGCAT--ACTGTTGTATTAATAGACTGTACATTTCAGAGTGCACATTTTC 1452817 Query 21793 TATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTC-GGAATAAA 21851 || || || ||||| || ||||| | | ||| || | ||||||||| | |||| Sbjct 1452816 AATGGCCATTTGAAAGCCATAAAAGAAACGTGCTTCAGTTACTTGAACCTCTTGGCTAAA 1452757 Query 21852 ATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATAT 21911 | |||| | | || |||||||| || || ||||| || |||||||| ||||| | || Sbjct 1452756 A-CGTTCAACTAAATTTTCATTGACGATGCCATCGGATGCAGCAAAAAAGGCCAACACAT 1452698 Query 21912 TTTTTATAAAATATCGTTCGTTATCTGTTAATTTT----TTCCAATCTAATAAATCTTTT 21967 ||||| |||| ||||| | || ||| ||||| ||||||| | ||| ||| Sbjct 1452697 GCTTTATGAAATTACGTTCATCTTC-GTTCATTTTATTGTTCCAATGATCCATATCCTTT 1452639 Query 21968 GATAAATCTACTTCTTCAGTTGTCCAAAA 21996 | || || ||||||||| ||||||||| Sbjct 1452638 GTCAAGTCAACTTCTTCAACTGTCCAAAA 1452610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531738071599000