Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq6116 140 3e-28 seq193 131 2e-25 seq317 109 5e-19 seq314 87.8 2e-12 >seq6116 Length=1078 Score = 140 bits (154), Expect = 3e-28 Identities = 432/660 (65%), Gaps = 24/660 (4%) Strand=Plus/Plus Query 147449 ATGCTGATTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGT 147508 ||| ||||||||||||||| | || || || | ||| | || ||| | || || Sbjct 251 ATGATGATTGACCACTTGAAATTCACCGGATAAAACACGACGATTGTAAATGTTTGATGT 310 Query 147509 AAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTA 147568 ||||||| || || ||||||||||| || || || || || | || || |||||| Sbjct 311 GTACGGCTCAAATGATTCGTTGTTACCAAGGATTTGAGCCGTGCTGGCGGTAGGCATGGG 370 Query 147569 AGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCCCA 147628 |||| | |||||||| || | || || || |||| | || | || ||| Sbjct 371 TGCAAGTAGCAATGAATTTCGGACACCATGTTGGGCGATTTTCCCTTTCAATTCAGTCCA 430 Query 147629 GTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAACT 147688 ||||| |||||| | | | ||| | ||||||| |||| | |||| || || || Sbjct 431 ATTCCATAGATCAGTTGGT--GTTT-TGTTCCACATATCATATTGTAGAATACCTTTGCT 487 Query 147689 TGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTTTG 147748 | || || | || | ||||||| ||| || ||| | ||| || | Sbjct 488 GACTGGTGACCCCGCATATGTTTCGTATGGGCCGAATTTTTCAGCCAATTCACAGCT--G 545 Query 147749 ACTT--AGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCTCT 147806 ||| | ||||||||||||||| ||||| |||| | || ||| | | |||| | Sbjct 546 GCTTCCAATGCACCATAATAAATGGTTTCGAAAATTTGTTGATTCATTTGAGCCGCCTGT 605 Query 147807 TGGCTGTCGTAGGGCATATC----CAAAATGGCGAACGTATCCGCAAGTCCTTGAATACC 147862 | || || || || ||| | ||||||| |||| ||| || | ||||||||||| Sbjct 606 GGACTTTCATATGG-ATAACGCATCAAAATG---AACGCATCGGCCAAACCTTGAATACC 661 Query 147863 GATACCGATGGGTCGGTGTCTGAAATTCGATGCTTGAGCGCTAGCCAACGGATAAAAATT 147922 || || ||||| || |||| ||||||| || || | |||||||||| |||| Sbjct 662 AATTCCAATGGGACGATGTCGTTTATTCGATTTTTCTGCCTCGGGCAACGGATAATAATT 721 Query 147923 CAAGTCGATAATTTTATTGAGATTATTGGTAACCACTCTAGATACATTGTAGAGCGACTT 147982 | ||||||||||| || | ||| ||||||| ||| | | | ||| | | || Sbjct 722 GACATCGATAATTTTGTTCAAATTTCTGGTAACGACTTTTGTGA---TGTCTTTCAATTT 778 Query 147983 ---AAAGTCGAAGCTTTTAAACTGTTTATTGGCAAAATTATTTACGGCAATCGAGGCCAA 148039 ||| || || |||| | || || |||| |||| || |||||||||||||| Sbjct 779 TTGAAAATCAAATGTTTT---GTTTTGTGTGACAAACATATTAACAGCAATCGAGGCCAA 835 Query 148040 GTTACACACGGCCGTTTCTCGATTGTCGCTATATTGAACGATTTCGGCACACAGATTGCT 148099 ||||| || || ||| |||||| | |||| ||||||||| | ||| | ||| || Sbjct 836 ATTACAAACAGCAACTTCATCTTTGTCGGTGTATTCAACGATTTCAGTACATAAATTACT 895 >seq193 Length=1219868 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| |||||||| ||||| ||| | ||||| | ||| | ||| || Sbjct 521229 ATGCAAATTTTTGTCAAAACATTGACTGGCAAAACCATCACTTTGGAAGTTGAACCATCA 521170 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||| |||||||| || || || || |||||| Sbjct 521169 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCAA 521110 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| || | |||| | || |||||| | ||||||| | | | | |||||||| ||| Sbjct 521109 CAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTACAAC 521050 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||||||| ||| | ||| |||| || | ||| | || || Sbjct 521049 ATTCAAAAAGAATCAACTTTGCATTTGGTATTGCGTCTTCGTGGTGG 521003 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| |||||||| || |||||| | ||||| | || | ||| || Sbjct 521913 ATGCAAATTTTTGTGAAAACATTGACCGGAAAAACCATCACTTTGGAGGTCGAACCATCA 521854 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| ||||||||||| || || || || ||| Sbjct 521853 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCAA 521794 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | |||| | ||| |||||| | ||||||| | | | | |||||||||||| Sbjct 521793 CAGCGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTATAAC 521734 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||||||| ||| | ||| |||| || | ||| | || || Sbjct 521733 ATTCAAAAAGAATCAACTTTGCATTTGGTATTGCGTCTTCGTGGTGG 521687 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| |||||||| ||||||||| | ||||| | ||| | ||| || Sbjct 520792 ATGCAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAACCATCA 520733 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| ||||||||||| || || || |||||| Sbjct 520732 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 520673 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | |||| || ||| ||||| | ||||| | | | | | |||||||||| Sbjct 520672 CAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGCACTTTATCCGACTATAAC 520613 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||||||||| || | ||| |||| || Sbjct 520612 ATTCAAAAAGAATCAACATTGCATTTGGTTCT 520581 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| |||||||| ||||| || | ||||| | ||| | ||| || Sbjct 521685 ATGCAAATCTTTGTCAAAACATTGACTGGCAAGACCATCACATTGGAAGTTGAACCATCA 521626 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| ||||||||||| || || || |||||| Sbjct 521625 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 521566 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | |||| || ||| ||||| | ||||| | | | | | |||||||||||| Sbjct 521565 CAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGTACTTTGAGCGACTATAAC 521506 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||||||||| || | ||| |||| || Sbjct 521505 ATTCAAAAAGAATCAACATTGCATTTGGTTCT 521474 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| |||||||| ||||| || | ||||| | ||| | ||| || Sbjct 521457 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACTTTGGAAGTTGAACCATCA 521398 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||| ||||||||||| || || || |||||| Sbjct 521397 GACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 521338 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | |||| || ||| |||||| | ||||| | | | | | |||||||| ||| Sbjct 521337 CAGCGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGTCGTACATTGAGCGACTACAAC 521278 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || ||||| || | ||| ||||| || | ||| | || || Sbjct 521277 ATTCAGAAGGAATCAACATTGCATTTGGTCTTGCGTCTTCGTGGTGG 521231 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || |||||||| || |||||| | ||||| | || | ||| || Sbjct 520287 ATGCAAATTTTCGTCAAAACATTGACCGGAAAAACCATCACTTTGGAGGTTGAACCATCA 520228 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| || || ||||||||||| || || || |||||| Sbjct 520227 GACACCATCGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCGCCAGATCAA 520168 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | |||| | |||||| ||| | ||||||| | | | ||||||||||| Sbjct 520167 CAGCGTTTGATTTTTGCCGGCAAGCAATTGGAAGATGGCCGTACATTGAGCGACTATAAT 520108 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 || ||||| ||||| || | ||| |||| || | ||| | || ||||| Sbjct 520107 ATCCAAAAGGAATCAACATTGCATTTGGTTCTTCGTCTTCGTGGCGGAAA 520058 Score = 104 bits (114), Expect = 2e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| ||||||||||| || || || |||||| Sbjct 520960 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 520901 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| || | |||| | || |||||| | ||||||| | | | | |||||||||||| Sbjct 520900 CAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTATAAC 520841 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||||||| ||| | ||| |||| || | ||| | || || Sbjct 520840 ATTCAAAAAGAATCAACTTTGCATTTGGTATTGCGTCTTCGTGGTGG 520794 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 |||||||| || || || || ||||||||| || | |||| | || |||||| | ||| Sbjct 520422 GACAAAGAGGGTATTCCACCAGATCAACAACGATTGATTTTTGCTGGTAAACAATTGGAA 520363 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| | | | | |||||||| ||||||||||||||||| ||| | ||| |||| || Sbjct 520362 GATGGTCGTACTTTGAGCGACTACAACATTCAAAAAGAATCAACTTTGCATTTGGTATTG 520303 Query 26982 AGACTTAGAGGAGG 26995 | ||| | || || Sbjct 520302 CGTCTTCGTGGTGG 520289 >seq317 Length=2337800 Score = 109 bits (120), Expect = 5e-19 Identities = 350/530 (66%), Gaps = 41/530 (8%) Strand=Plus/Minus Query 119646 TACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATA 119705 || ||||| |||||||||||||| |||||||| ||||| | | || ||||| | |||| Sbjct 1453418 TATTCGCCGACACGTTTTTCAAAGAAATTAGTTTTGCCTTGTAATGAAATGTTTTCCATA 1453359 Query 119706 AACTCGAAAGGAT--TTG--CAGTGTTGA--AATGCTTGTCGTAGCCCAACTCGAACAAC 119759 || | || |||| ||| || ||| |||| | ||| ||||||| ||| |||| Sbjct 1453358 AATTTAAATGGATTCTTGACCA----TGAATAATGGT--TCGCAGCCCAATTCGCTCAAC 1453305 Query 119760 AGTCGATCTGCCACAAACTCGATGTATTCGCACATGGAT-TGC-GAATTCATGCCCAACA 119817 | ||||| || ||||| || ||||| || ||| || || ||||||||||||||| Sbjct 1453304 AAACGATCGGCAACAAATTCAATGTA--CGTACACATATCAGCACAATTCATGCCCAACA 1453247 Query 119818 TAGCGACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTCTACAAACA 119877 | | || || || ||| || || || |||||||||||| |||||||| ||| | Sbjct 1453246 TTGAAACTGGCAATGCAACCGTTAAAAATTCCTTTTCAATGCGAACCGCTTCAGCAATAA 1453187 Query 119878 TACT--CAACACCTTGGTCTTGGAGAGCTTGTTCTTTTCGGGAATATATTTATTGTAGTA 119935 || | |||| | |||| | | | || |||| || ||||||| | Sbjct 1453186 TATTGCGTACAC---GTTCTT---GTGATGGT--TTTTGTACAACATATTTA---AACAT 1453138 Query 119936 TAGACAAGCAAAGTCGGTGTGTAGTCCTTCGTCTCTGGAAATGAGTTCGTTGCTGTAAGT 119995 || ||| ||||| || || | || || || | ||||| | ||| ||| | || Sbjct 1453137 TAAACATGCAAAATCACAATGCATGCCCTCATCACGTGAAATTAATTCATTGGAAAATGT 1453078 Query 119996 CAAGCCGGG---TAGAGCTCCTTTTTTCGAGTCTTTGATATAGTAGATTGCAGCAAAACT 120052 || ||||| |||| | | ||||||| | | | | ||||| ||||| || Sbjct 1453077 TAAACCGGGCATTAGACCACGTTTTTTCAA-----CCAAAAAATAGAT----GCAAAGCT 1453027 Query 120053 ACCAGaaaaaaaGACGCCTTCGACGATAGCAAAAGCGACCATGCGTTCGGCGAATGTGGC 120112 ||| |||||| | ||||| || ||||| || || | ||||| | |||||||| Sbjct 1453026 ACCGCTAAAAAAAATCCCTTCAACAGCTGCAAATGCAACAACACGTTCACCAAATGTGGC 1452967 Query 120113 AGATTGATTTTCGATCCATTTTTGAGCCCAAGCCGCCTTCTGCTTGACAC 120162 | || | | ||||||| | |||||| | ||||||| || |||| Sbjct 1452966 CGTTTTGCTGCCAATCCATTGTAATGCCCAATCGGCCTTCTTTTTAACAC 1452917 >seq314 Length=2668924 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 71670 AAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTC 71729 |||| |||||||| || |||||| | || ||| || || || || || ||||| | Sbjct 825534 AAACCCATGATGATCTGTGGAATTCGGCACAGATTCAACTGAATAAAGAAGGAAAAATGC 825475 Query 71730 ACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGC 71789 |||| | || |||||||| ||||| |||||||| | || ||||| || | || || Sbjct 825474 ACGGTTTTCTTCGCATGTATTGGGCAAAAAAGATATTGGAATGGACCGAATCACCGGAAA 825415 Query 71790 AGGCGCTCGAGTATT-CTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCT 71848 |||| ||| ||||| | || ||| | || ||| || | | || ||||||||||| Sbjct 825414 AGGCTCTC-AGTATCGCCATATATTTGAATGATTATTATGCTATAGATGGTCGCGATCCA 825356 Query 71849 AACGGTTATGTCGGT 71863 || || ||||| ||| Sbjct 825355 AATGGATATGTTGGT 825341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478515959222000