Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq29 196 1e-44 seq33 122 2e-22 seq18152 116 1e-20 seq6116 84.2 6e-11 >seq29 Length=2096867 Score = 196 bits (216), Expect = 1e-44 Identities = 1096/1739 (63%), Gaps = 24/1739 (1%) Strand=Plus/Plus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 |||||| | | || |||||||| || ||||||||||||||||| ||| |||| || Sbjct 936415 ATCAATCGCAAAATAGTTGAACGTCCACAGCATATGTTAATGCGAACGGCTGTTGGAATT 936474 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC 363549 ||| || ||| ||| ||| || ||||||||||| || | ||| | ||| Sbjct 936475 CATGGCAATGATATTGGTGCTGCCATTGAAACATACAATTTGCTATCGGAAAAATATTTC 936534 Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGC 363609 || || || | ||||| ||| ||||| || | | ||||||| || || ||| Sbjct 936535 ACACATGCATCACCAACGTTGTTTGCGGCTGGTACGCCTCGTCCACAGTTGAGCTCATGC 936594 Query 363610 TTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGT 363669 ||| | | ||| || || || | || || | ||| || | || || Sbjct 936595 TTTTTGTTGTCAATAGTTGATGACAGTATGCAAGGAATTTATGAAACGTTGAAAAACGTA 936654 Query 363670 GCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA- 363728 ||| | ||||| ||| | || |||||||| || || || || | | || | | Sbjct 936655 GCTTTAATTTCAAAGCACGCGGGCGGAATAGGCCTAGCGGCTCATTGTATACGAGGTCGA 936714 Query 363729 -GAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTG 363787 |||||| | || ||| || || || || ||||| | || || |||||||||| Sbjct 936715 GGAACAG--AAATAGCCGGAACGGGAGGGGTTTCAAATGGTATAGTGCCAATGCTTCGTG 936772 Query 363788 TGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTG 363847 | | | | || || |||| ||||| || |||||| || || ||| || || | Sbjct 936773 TTTATAATGCAACCGCTCGGTATGTCGATCAAGGTGGA---AAACGTCCAGGTGCATTCG 936829 Query 363848 CTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACA 363907 | || || |||||||| ||||| || |||| || ||| | | || || || || | Sbjct 936830 CCATTTACCTCGAGCCATGGCATGCTGAAGTTTTCGAATTTTTGAACCTTCGAAAGAATA 936889 Query 363908 CGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATT 363967 | || |||| ||| || ||||||||||| | || |||||| || | || | Sbjct 936890 CCGGTCAAGAAGAAGAACGATGTCGTGATCTGTTTTTGGCCCTTTGGATTCCCGATTTGT 936949 Query 363968 TTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAG 364027 | ||| | || || || | | | | ||| | | || |||||| ||| | || Sbjct 936950 TCATGCAACGTGTTGAAAACGATGAAATGTGGAGTTTAATGTGTCCACACAAATCACAAG 937009 Query 364028 GTCTTTCCGATGTA-TGGGGTGACGACTATGTTG--CTCTATACGAAAAGTATGAATCGG 364084 | ||| | | | |||||| | || | || |||||||| | |||||| | Sbjct 937010 G-CTTACACACAAAATGGGGTCAAGAGTTTGAAAAACTCTATACCGAT--TATGAAAAAG 937066 Query 364085 AGGGAAAGGCTCGTAAGACAATTCCCG-CACAGAAGCTATGGTTTGCCATCATGGATTCG 364143 | || || || | |||||| | | | | | | || |||||| || | | | Sbjct 937067 AAGGGAATT-TCATCAGACAAGTGAAGGCTCGGGATCTTTGGTTTCAAATTGTTCAGGCA 937125 Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 || || || || |||||||| || ||||| | |||||| | ||||| || || ||| Sbjct 937126 CAAATCGAAACTGGAACACCATACATGTTATTCAAAGACGCCTGCAATCGTAAAAGTAAC 937185 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 || ||| |||||||||| ||||| || || |||||||||| ||| |||||| ||| Sbjct 937186 CAACAGAACCTTGGTACCATTCAATGCAGTAATTTATGTACCGAAATTGTTGAATTCACA 937245 Query 364264 GCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA- 364322 | | || || | ||| || ||||| | || ||||| || || |||||||| Sbjct 937246 AGTTCTGATGAAATTGCTGTTTGTAATTTGGCATCGATAGCCGTTAACATGTTTGTAACC 937305 Query 364323 --AGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAAT 364380 ||| || | || | | | | || | || | | ||| | ||| Sbjct 937306 GCAGACAAAACATACGATTTTGATAAGTTGAAAGAAATCACAAAAGTCGTTACACGAAAT 937365 Query 364381 CTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATG 364440 || |||| | || || || ||||||||| | || ||||| || ||||| || | Sbjct 937366 CTGAACAAAATCATTGATGTTAACTATTATCCATTGCCCGAAGCTGAACGTTCCAACAAA 937425 Query 364441 CGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG 364500 |||||||| ||| |||| |||| | || || | || || | || || || | Sbjct 937426 CGTCATCGGCCGGTTGGCATTGGAATTCAAGGTTTAGCCGATGCATTCATTTTGATGCGA 937485 Query 364501 ATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTAT 364560 || ||| ||| ||| || |||||| || | || || ||||| || || Sbjct 937486 ATTCCATATGAAAGTGATGAGGCAATGAAACTAAATCAGCAAATTTTCGAAACGATTTAC 937545 Query 364561 TTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTAT 364620 | || || || ||| ||||| ||||| | | | || || || ||| Sbjct 937546 TATGGTGCCTTGGAAGCTAGTTGTGAATTGGCCGAGATTGATGGGCCATATGAAACATAT 937605 Query 364621 GAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCT 364680 || || || || || | || || || | ||| | ||||| |||||| | Sbjct 937606 GATGGATCACCGGTTAGCAAAGGTGTTTTACAATACGATATGTGGAACAAAACGCCAACC 937665 Query 364681 GTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCC 364740 | |||||| |||| | | || | || || || |||||| || || || Sbjct 937666 GATTTATGGAATTGGGCTGCATTAAAAACGAAAATTGCTAAACATGGTGTACGAAATTCA 937725 Query 364741 CTCGTTACA-GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTG 364799 | |||| || || ||||| || ||| ||| || || || ||||| ||||| || | Sbjct 937726 TTA-TTACTCGCTCCAATGCCGACAGCTAGTACGGCTCAAATTCTCGGCAACAATGAATC 937784 Query 364800 CTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGT 364859 |||||||| | ||| ||| ||||| ||||| ||||||||||| ||||||| || Sbjct 937785 ATTCGAACCTTACACATCAAATATTTATAATCGCCGTGTTCTTTCCGGTGAATTTCAAGT 937844 Query 364860 AGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAA 364919 || ||| | | || |||| ||| | |||| || |||||| || |||||| Sbjct 937845 GGTCAATCATCATCTGATCAAAGATTTGACCGAAATCGATATGTGGGACGATGACATGAA 937904 Query 364920 GAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCT 364979 ||| | ||||| |||| | ||||||| | || || || || || ||||| |||| | Sbjct 937905 AAACGAAATCATTGCCGATTATGGTTCAATTCAAAATATCACACGAATTCCACAAGAAAT 937964 Query 364980 GAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGC 365039 | | ||||||||||| |||||||| || | ||| ||| ||||||| || Sbjct 937965 TCGCGATTTATACAAAACCGTTTGGGAAATATCTGTTAAAACAACCATCAATATGGCTGC 938024 Query 365040 CGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA--TGACTCAGCCA 365097 ||||| ||||| || ||| ||| || || ||||| || | | || || | | ||| Sbjct 938025 TGATCGGGGTGCGTTCATCGATCAAAGTCAATCGTTCAA--TTTGCATGTGGCCGAACCA 938082 Query 365098 ACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 || | ||| || | || || || ||||| || | |||||| ||||||| || ||||| Sbjct 938083 ACATACGCAAAAATGACTTCGATTCATTTTTATGCATGGAAAGCCGGTCTCAAAACAGG 938141 >seq33 Length=1400293 Score = 122 bits (134), Expect = 2e-22 Identities = 205/294 (70%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 111360 GAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAAT 111419 |||||| | ||||||| || || |||||||||||||| ||| | || || ||| Sbjct 742218 GAAGAATTGTTGTGGTTCATCAAAGGCAGTACAAATGCAAAGGAATTACAAGACAAGAAT 742159 Query 111420 GTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGAC 111479 | | ||||||||||| ||| | ||||||| ||||| ||| | |||| || || Sbjct 742158 ATTCACATTTGGGATGGCAATAGCACACGTGAATTTCTCGATAAAAATGGTTTTCATGAT 742099 Query 111480 AACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGAC 111539 ||||| || ||| | ||||| ||||| || ||||||||||| || ||||| || || Sbjct 742098 CGTGAAGAGGGCGATTTGGGACCGGTTTATGGTTTTCAATGGCGACATTTTGGCGCTGAA 742039 Query 111540 TACAAAACCATG-CACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCAT 111598 ||||||| |||| || ||| ||| || || | ||||||||| | | || || Sbjct 742038 TACAAAA-CATGTCATGACGATTATACCGGCCAAGGCATTGATCAATTGAATGAAGTTAT 741980 Query 111599 TGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAA 111652 ||| ||| | ||| || | | |||||| ||||| ||||| || ||||| Sbjct 741979 CAATCGTATTCGTACCAATCCTAATGATCGTCGAATTATCATGAGCGCTTGGAA 741926 Score = 87.8 bits (96), Expect = 5e-12 Identities = 128/180 (71%), Gaps = 1/180 (1%) Strand=Plus/Minus Query 111726 CTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATT 111785 || ||||| ||| |||||||||| || || ||||| ||| | ||||| || || |||||| Sbjct 741754 CTATCATGTCAATTGTATCAGCGGTCAGCCGATATGGGTTTAGGTGTACCATTCAATATT 741695 Query 111786 GCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAA 111845 ||||| || || | | || | | | || |||||| |||| | ||||| || || Sbjct 741694 GCAAGCTATGCTTCATTGACATACATGATTGCTCATGTTACTGGCTTGAAACCAGGCGAT 741635 Query 111846 TTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACA 111905 ||||| || || || ||||| |||||||| || || ||||| || ||||| || Sbjct 741634 TTCATCCATACAATTGGCGATGCTCATGTTTATCTCAATCATATTGAACCA-TTAAAGCA 741576 >seq18152 Length=5868 Score = 116 bits (128), Expect = 1e-20 Identities = 264/392 (67%), Gaps = 10/392 (3%) Strand=Plus/Minus Query 364771 ACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCA 364830 || ||||| || ||||| ||||| || | ||||| || | ||| ||| ||||| Sbjct 3590 ACAGCACAAATTCTCGGCAACAATGAATCATTCGAGCCATACACATCGAATATTTATATT 3531 Query 364831 CGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCC 364890 || || || | | || ||||||| ||| |||||| | | | | |||||| | | Sbjct 3530 CGTCGTGTATTGGCTGGTGAATTTCAGGTGGTTAATCATCATTTGATTAAGGATTTAACT 3471 Query 364891 GACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTG 364950 ||| ||| ||||| ||| ||||| || | || ||||||| ||||||| | Sbjct 3470 GACATCGGTATGTGGAATGAAGATATGAAAAATGAAATTATCGCCGAATATGGTTCAATT 3411 Query 364951 CAGAACATTCCAGGATTTCCAGAAGATCTGAAGC-CTATTTA--CAAAACCGTATGGGAA 365007 || || || || || ||||| | || || | | ||||| ||||||||| |||||| Sbjct 3410 CAAAATATCACACGAATTCCAAAGGA---GATTCGCGATTTATACAAAACCGTTTGGGAA 3354 Query 365008 ATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGC 365067 |||||| | || ||| ||||||| || ||||| || || ||||| ||| | Sbjct 3353 ATTTCCGTCAAGACGACGATTAATATGGCTGCAGATCGTGGAGCATTTATTGATCAAACG 3294 Query 365068 CAGTCGTTTAACGTATTCATGACTCAG--CCAACCTCCGCCAAGCTTACATCCATGCATT 365125 || |||||||| |||||||| ||| ||||| | | || | ||||| |||| Sbjct 3293 CAATCGTTTAA--TATTCATGTGGCAGAACCAACTTATTCAAAAATGTGTTCCATCCATT 3236 Query 365126 TCTACGGGTGGAAATCCGGTCTTAAGACAGGT 365157 |||||| |||||| |||||||| || ||| Sbjct 3235 TCTACGCATGGAAAAAAGGTCTTAAAACTGGT 3204 >seq6116 Length=1078 Score = 84.2 bits (92), Expect = 6e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 364144 CAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAAC 364203 || ||||| ||||| ||||| || || |||||||||||| | |||||||| ||| ||| Sbjct 982 CAAATTGAAACAGGCACACCGTACATCTTGTACAAAGATGCATGCAACCGAAAGAGCAAT 923 Query 364204 CAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 || ||| | ||||| || || | || || ||||||| || || ||||||||||| Sbjct 922 CAACAGAATCTTGGCACTATCCGATGTAGTAATTTATGTACTGAAATCGTTGAATACACC 863 Query 364264 G 364264 | Sbjct 862 G 862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302944886639450