Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6116 167 2e-36 seq193 116 3e-21 seq317 111 1e-19 seq17930 91.5 1e-13 >seq6116 Length=1078 Score = 167 bits (184), Expect = 2e-36 Identities = 483/731 (66%), Gaps = 28/731 (4%) Strand=Plus/Plus Query 132199 ATGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAGT 132258 ||| ||||| || | |||| ||||||| ||||| || | || ||| | || || Sbjct 251 ATGATGATTGACCACTTGAAATTCACCGGATAAAACACGACGATTGTAAATGTTTGATGT 310 Query 132259 AAACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTA 132318 ||||||| || ||||||||||| || | |||||||| || | || || |||||| Sbjct 311 GTACGGCTCAAATGATTCGTTGTTACCAAGGATTTGAGCCGTGCTGGCGGTAGGCATGGG 370 Query 132319 GGCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCA 132378 |||| | |||||||| || | || ||| ||| |||| || ||| | || ||| Sbjct 371 TGCAAGTAGCAATGAATTTCGGACACCATGTTGGGCGATTTTCCCTTTCAATTCAGTCCA 430 Query 132379 GTTCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTACT 132438 ||||| |||||| | | | | | ||||||| |||| | |||| | ||| | || Sbjct 431 ATTCCATAGATCA---GTTGGTGTTTTGTTCCACATATCATATTGTAGAATACCTTTGCT 487 Query 132439 TGCAGGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCTCTG 132498 | || || || ||| | ||||||| ||| | || || | ||| | ||| Sbjct 488 GACTGGTGACCCCGCATATGTTTCGTATGGGCCGAATTTTTCAGCCAATTCACAG--CTG 545 Query 132499 ACT--CAGGGCACCATAATAAATAGTCTCTGAGATTTTTCTATTCAATTCCCTTGCTTGT 132556 || || |||||||||||||| || || | |||| | ||||| || || ||| Sbjct 546 GCTTCCAATGCACCATAATAAATGGTTTCGAAAATTTGTTGATTCATTTGAGCCGCCTGT 605 Query 132557 TGACTGTCGTAGGGCAAA---TTTAAAATAGCGAACGCATCGGCAAGTCCCTGAATGCCG 132613 |||| || || || || | ||||| |||||||||||| | || ||||| || Sbjct 606 GGACTTTCATATGGATAACGCATCAAAAT---GAACGCATCGGCCAAACCTTGAATACCA 662 Query 132614 ATACCGATGGGTCTATGTTTAAAATTCGATACTTGTGCGCTAGTCAGCGGATAAAAGTTT 132673 || || ||||| | |||| ||||||| || ||| | || ||||||| | || Sbjct 663 ATTCCAATGGGACGATGTCGTTTATTCGATTTTTCTGCCTCGGGCAACGGATAATAATTG 722 Query 132674 TTGTCTATTATTTTATTGAGATTGTTAGTGACAACTCTAGCCA---CTTTATATAGCGAT 132730 || || ||||| || | ||| | || || ||| | | | |||| || | Sbjct 723 ACATCGATAATTTTGTTCAAATTTCTGGTAACGACTTTTGTGATGTCTTTCAAT---TTT 779 Query 132731 TCAAAGTCAAAGTTTTTAGTCCTTTTGT-TGGCAAAACAATTGACGGCAATCGAGGCCAA 132789 | ||| ||||| |||| |||||| || |||| ||| || |||||||||||||| Sbjct 780 TGAAAATCAAATGTTTT----GTTTTGTGTGACAAACATATTAACAGCAATCGAGGCCAA 835 Query 132790 ATTGCATACGGCTGTCTCTTTATTATCGCTATACTGTACGATTTCTGCACACAAATTACT 132849 ||| || || || || | || ||| | || | |||||||| | ||| |||||||| Sbjct 836 ATTACAAACAGCAACTTCATCTTTGTCGGTGTATTCAACGATTTCAGTACATAAATTACT 895 Query 132850 GTTTCGAATAACTCCCAAG-tttttttGATTGTTTTTCTCGTTTACGT-TATCTTTATGC 132907 ||| || | | ||||| || | ||||||| | || ||| || | | |||||| | | Sbjct 896 ACATCGGAT-AGTGCCAAGATTCTGTTGATTGCTCTT-TCGGTTGCATGCATCTTTGTAC 953 Query 132908 AACATGTACGG 132918 || |||||||| Sbjct 954 AAGATGTACGG 964 >seq193 Length=1219868 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||||| || |||||| | || || | || ||||| ||| | Sbjct 521913 ATGCAAATTTTTGTGAAAACATTGACCGGAAAAACCATCACTTTGGAGGTCGAA-CCATC 521855 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | ||||| ||||| ||||||||||| || || || || || Sbjct 521854 AGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGAATTCCACCAGACCA 521795 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | |||||| | ||| || ||| | ||||||| | | | ||||| ||||| Sbjct 521794 ACAGCGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTATAA 521735 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||||||||||||| || | ||||| || || Sbjct 521734 CATTCAAAAAGAATCAACTTTGCATTTGGTATT 521702 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || |||||||| || |||||| | || || | || || || ||| | Sbjct 520287 ATGCAAATTTTCGTCAAAACATTGACCGGAAAAACCATCACTTTGGAGGTTGAA-CCATC 520229 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | ||||| || || ||||||||||| || || || ||||| Sbjct 520228 AGACACCATCGAAAACGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCGCCAGATCA 520169 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | |||||| | |||||||||| | ||||||| | | | | ||||| ||||| Sbjct 520168 ACAGCGTTTGATTTTTGCCGGCAAGCAATTGGAAGATGGCCGTACATTGAGCGACTATAA 520109 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| ||||| ||| | ||||| || Sbjct 520108 TATCCAAAAGGAATCAACATTGCATTTGGT 520079 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||||| ||||||||| | || || | ||||| || ||| | Sbjct 520792 ATGCAAATCTTTGTCAAAACATTGACTGGAAAAACCATCACATTGGAAGTTGAA-CCATC 520734 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | ||||| ||||| ||||||||||| || || || ||||| Sbjct 520733 AGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCA 520674 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | |||||| || ||| || || | ||||| | | | | ||| ||||| Sbjct 520673 ACAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGCACTTTATCCGACTATAA 520614 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||||||||||| ||| | ||||| || Sbjct 520613 CATTCAAAAAGAATCAACATTGCATTTGGT 520584 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||||| ||||| || | || || | ||||| || ||| | Sbjct 521685 ATGCAAATCTTTGTCAAAACATTGACTGGCAAGACCATCACATTGGAAGTTGAA-CCATC 521627 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | ||||| ||||| ||||||||||| || || || ||||| Sbjct 521626 AGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCA 521567 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | |||||| || ||| || || | ||||| | | | | ||||| ||||| Sbjct 521566 ACAGCGTTTGATTTTCGCCGGTAAACAGTTAGAAGACGGTCGTACTTTGAGCGACTATAA 521507 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||||||||||| ||| | ||||| || Sbjct 521506 CATTCAAAAAGAATCAACATTGCATTTGGT 521477 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||||| ||||| ||| | || || | ||||| || ||| | Sbjct 521229 ATGCAAATTTTTGTCAAAACATTGACTGGCAAAACCATCACTTTGGAAGTTGAA-CCATC 521171 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | || || ||||| |||||||| || || || || ||||| Sbjct 521170 AGACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAGGGTATTCCACCAGATCA 521111 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || |||||| | || || ||| | ||||||| | | | ||||| || || Sbjct 521110 ACAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTACAA 521051 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||||||||||||| || | ||||| || || Sbjct 521050 CATTCAAAAAGAATCAACTTTGCATTTGGTATT 521018 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| |||||||| ||||| || | || || | ||||| || ||| | Sbjct 521457 ATGCAAATTTTTGTCAAAACATTGACTGGCAAGACCATCACTTTGGAAGTTGAA-CCATC 521399 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | || || ||||| ||||||||||| || || || ||||| Sbjct 521398 AGACACCATCGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCA 521339 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | |||||| || ||| || ||| | ||||| | | | | ||||| || || Sbjct 521338 ACAGCGTTTGATTTTCGCCGGTAAACAATTGGAAGACGGTCGTACATTGAGCGACTACAA 521279 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||| || ||||| ||| | ||||| || || Sbjct 521278 CATTCAGAAGGAATCAACATTGCATTTGGTCTT 521246 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| ||||||||||| || || || |||||| Sbjct 520960 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATTCCACCAGATCAA 520901 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || |||||| | || || ||| | ||||||| | | | ||||| |||||| Sbjct 520900 CAACGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTCGTACTTTGAGCGACTATAAC 520841 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||||||||||||| || | ||||| || || Sbjct 520840 ATTCAAAAAGAATCAACTTTGCATTTGGTATT 520809 >seq317 Length=2337800 Score = 111 bits (122), Expect = 1e-19 Identities = 159/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 104593 TATTCGCCTACTCGTTTTTCaaaaaaaTTAGTCTTGCCCTCCAGAGAAATATTATTCATA 104652 |||||||| || ||||||||||| |||||||| ||||| | | ||||| || | |||| Sbjct 1453418 TATTCGCCGACACGTTTTTCAAAGAAATTAGTTTTGCCTTGTAATGAAATGTTTTCCATA 1453359 Query 104653 AATTCGAAAGGATTCAAAGTCTTAAAATATTTTTCGTAGCCAAGCTCGATCAACAGTCGA 104712 |||| || |||||| | | || || |||| |||| | ||| |||||| ||| Sbjct 1453358 AATTTAAATGGATTCTTGACCATGAATAATGGTTCGCAGCCCAATTCGCTCAACAAACGA 1453299 Query 104713 TCCGCCACAAATTCGATGTACTCGCACATAGAATGTGCATTCATGCCCAGCATTGCGACG 104772 || || |||||||| |||||| |||||| | ||||||||||| ||||| || Sbjct 1453298 TCGGCAACAAATTCAATGTACGTACACATATCAGCACAATTCATGCCCAACATTGAAACT 1453239 Query 104773 GGTAAAGCGTTAGTaaaaaaaTCTTTCTCGATGTCCACGGCTTC 104816 || || || || ||||| || || || ||| || ||||| Sbjct 1453238 GGCAATGCAACCGTTAAAAATTCCTTTTCAATGCGAACCGCTTC 1453195 >seq17930 Length=2109152 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || |||||| | || || ||||| |||| || || | || || | ||||||||| | Sbjct 1835305 AAGATGCAAATTTTCGTTAAAACTCTAACCGGCAAGACTATCACACTTGAAGTCGAGCCA 1835364 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||| ||||| | ||||| || || |||||||||||||| || || || Sbjct 1835365 TCCGACACAATCGAAAATGTCAAGGCTAAAATCCAAGACAAAGAAGGCATTCCACCAGAC 1835424 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 ||||| | |||||| | ||| || ||| | ||||||| | | | | |||||| Sbjct 1835425 CAACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACATTGTCCGATTAC 1835484 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 || || ||||| ||||| ||| | ||||| || || Sbjct 1835485 AATATCCAAAAGGAATCAACATTACATTTGGTATT 1835519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429807754793625