Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mayetiola_20destructor_20[genbank_20GCA_5F000149185.1_202010-10-18] 24,475 sequences; 185,827,756 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq29 168 6e-37 seq6116 132 5e-26 seq28 109 5e-19 seq17930 107 2e-18 seq193 96.9 3e-15 >seq29 Length=2096867 Score = 168 bits (186), Expect = 6e-37 Identities = 667/1040 (64%), Gaps = 21/1040 (2%) Strand=Plus/Minus Query 144749 GTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGAC 144808 ||||||||||| ||||| || |||||||| || | ||| | || || ||||| Sbjct 938159 GTGCGCAAATAATACATTCCTGTTTTGAGACCGGCTTTCCATGCATAAAAATGAATCGAA 938100 Query 144809 GTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAATG 144868 ||||| ||||| || || || |||||| |||||| | |||||| |||||||| ||| Sbjct 938099 GTCATTTTTGCGTATGTTGGTTCGGCCACATGCAAATTGAACGATTGACTTTGATCGATG 938040 Query 144869 AAAGCGTTGCGGTCGGCGGCCATCTCAATCATACGTTTG-CATTTCATTTCCCAAGCGGT 144927 || || || || || ||||| | || | ||| || | ||||||||| |||| Sbjct 938039 AACGCACCCCGATCAGCAGCCATATTGATGGTTGTTTTAACAGAT-ATTTCCCAAACGGT 937981 Query 144928 CTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTTGTG 144987 ||||| ||| ||| | | ||||| | || ||||| || || | | Sbjct 937980 TTTGTATAAATCGCGAATTTCTTGTGGAATTCGTGTGATATTTTGAATTGAACCATAATC 937921 Query 144988 CGCAAATATGGCGTTCCGCATTTCGGACGTGT-ACAGTTTTAACTTGATCAAGTCGTCAA 145046 |||| || |||| ||| || ||| ||| | | | | |||| || | | Sbjct 937920 GGCAATGATTTCGTTTTTCATGTCAT-CGTCCCACATATCGATTTCGGTCAAATCTTTGA 937862 Query 145047 TTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAG 145106 | | | |||||||| || ||||| || |||| | ||||| || ||| | || | Sbjct 937861 TCAGATGATGATTGACCACTTGAAATTCACCGGAAAGAACACGGCGATTATAAATATTTG 937802 Query 145107 ACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCA 145166 | ||| | ||||| || || || || ||||| || |||||||| || | || || |||| Sbjct 937801 ATGTGTAAGGTTCGAATGATTCATTGTTGCCGAGAATTTGAGCCGTACTAGCTGTCGGCA 937742 Query 145167 TGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTAC 145226 | || | ||||||||||| || | || || || || | |||| | | Sbjct 937741 TTGGAGCGAGTAATAATGAATTTCGTACACCATGTTTAGCAATTTTCGTTTTTAATGCAG 937682 Query 145227 CCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGC 145286 |||||| ||||| || ||| | || |||||| ||||| || |||| || | || Sbjct 937681 CCCAATTCCATAAATCGGTTGGCGTTTTGTTCCACATATCGTATTGTAAAACACCTTTGC 937622 Query 145287 TGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCA--AGTTTTGGCGAGCTCGCAACT 145344 | | || || | | | | || || |||| | | | ||| | || ||||| Sbjct 937621 TAACCGGTGATCCATCATATGTTTCATA--TGGCCCATCAATCTCGGCCAATTCACAACT 937564 Query 145345 CGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTC 145404 || |||| || || | ||||| || ||| ||||||| || || ||| || || Sbjct 937563 AGCTTCCAAGGCACCATAGTAAATCGTTTCGAAAATTTGCTGATTTAGTTTCATTGCCTC 937504 Query 145405 ATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCAC 145464 ||| || || || || || |||| || | || |||||||| | || || ||||| | Sbjct 937503 ATCACTTTCATATGGAATTCGCATCAAAATGAATGCATCGGCTAAACCTTGAATTCCAAT 937444 Query 145465 GCCGATGGGCCGATGTTTCATGTTGC-----TCATCCTCGCCGACTCGATAGGATATCGA 145519 ||| | |||||||| ||||| ||| | ||| | | |||| || | Sbjct 937443 GCCAACCGGCCGATGACGTTTGTTGGAACGTTCAGCTTCGGGCAATGGATA----ATAGT 937388 Query 145520 TTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTT 145579 | || || || ||||| |||| ||||| || || ||||| || | |||||| Sbjct 937387 TAACA-TCAATGATTTTGTTCAGATTTCGTGTAACGACTTTTGTGATTTCTTTCAACTTA 937329 Query 145580 TCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAA 145639 ||||| || | | | ||| || ||| | | || ||||| ||||| |||||| Sbjct 937328 TCAAAATCGTAT---GTTTTGTCTGCGGTTACAAACATGTTAACGGCTATCGATGCCAAA 937272 Query 145640 TTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTA 145699 |||||||| || | || || | || ||| || || |||| || ||||| || Sbjct 937271 TTACAAACAGCAATTTCATCAGAACTTGTGAATTCAACAATTTCGGTACATAAATTACTG 937212 Query 145700 CATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGC 145759 |||| ||||| || || || || || |||||||| | ||||| ||||| ||| | | | Sbjct 937211 CATTGAATGGTACCAAGGTTCTGTTGGTTACTTTTACGATTGCAGGCGTCTTTGAATAAC 937152 Query 145760 ATGTACGGTCCGCCAGTCTC 145779 ||||| ||| ||||| || Sbjct 937151 ATGTATGGTGTTCCAGTTTC 937132 >seq6116 Length=1078 Score = 132 bits (146), Expect = 5e-26 Identities = 485/751 (65%), Gaps = 15/751 (2%) Strand=Plus/Plus Query 145035 TCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCA 145094 |||| || | ||| || | |||||||| || ||||| || |||| || |||||||| Sbjct 235 TCAAATCTTTAATCAAATGATGATTGACCACTTGAAATTCACCGGATAAAACACGACGAT 294 Query 145095 AATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCG 145154 || | ||| || ||| | || ||||| || ||||| || || ||||||||||| || Sbjct 295 TGTAAATGTTTGATGTGTACGGCTCAAATGATTCGTTGTTACCAAGGATTTGAGCCGTGC 354 Query 145155 TTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTT 145214 | ||||| |||||| || | | |||||||| || | || || | ||| | | Sbjct 355 TGGCGGTAGGCATGGGTGCAAGTAGCAATGAATTTCGGACACCATGTTGGGCGATTT-TC 413 Query 145215 CCTTTAGCGT-ACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGC 145273 ||||| | | ||||| |||||| ||| || | || |||||| || || || Sbjct 414 CCTTTCAATTCAGTCCAATTCCATAGATCAGTTGGTGTTTTGTTCCACATATCATATTGT 473 Query 145274 AAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCG 145333 | ||| || | |||| | || || | | | ||| ||| | ||| || Sbjct 474 AGAATACCTTTGCTGACTGGTGACCCCGCATATGTTTCGTATGGGCCGAATTTTTCAGCC 533 Query 145334 AGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGC 145393 | || || || || |||| || || ||||||| || ||| |||||| || | Sbjct 534 AATTCACAGCTGGCTTCCAATGCACCATAATAAATGGTTTCGAAAATTTGTTGATTCATT 593 Query 145394 AGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCC 145453 | ||| | || || || || |||| || | || |||||||| | || Sbjct 594 TGAGCCGCCTGTGGACTTTCATATGGATAACGCATCAAAATGAACGCATCGGCCAAACCT 653 Query 145454 TGTATTCCCACGCCGATGGGCCGATGT--TTCATG---TTGCTCATCCTCGCCGACTCGA 145508 || || || | || ||||| |||||| || || || || ||||| | || Sbjct 654 TGAATACCAATTCCAATGGGACGATGTCGTTTATTCGATTTTTCTGCCTCGGGCAACGGA 713 Query 145509 TAGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGT 145568 || ||| ||| ||||||||||| ||||| |||| || || ||||| |||| Sbjct 714 TA--ATA---ATTGACATCGATAATTTTGTTCAAATTTCTGGTAACGACTTTTGTGATGT 768 Query 145569 GCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGA 145628 ||| |||| ||| ||||| | | ||| | ||| |||| || || | Sbjct 769 CTTTCAATTTTTGAAAATCAAATGTTTTGTTTTGTGTGACAA-ACA--TATTAACAGCAA 825 Query 145629 TCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGC 145688 |||| |||||||||||||| || || || |||| |||||| ||||| || | | Sbjct 826 TCGAGGCCAAATTACAAACAGCAACTTCATCTTTGTCGGTGTATTCAACGATTTCAGTAC 885 Query 145689 ACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGT 145748 | ||||| |||||| ||| || || ||||| || ||||| || || | |||||| || | Sbjct 886 ATAAATTACTACATCGGATAGTGCCAAGATTCTGTTGATTGCTCTTTCGGTTGCATGCAT 945 Query 145749 CCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779 | ||||| | ||||||||| ||| || || Sbjct 946 CTTTGTACAAGATGTACGGTGTGCCTGTTTC 976 >seq28 Length=2173237 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | || || ||||||||||||||||| ||| | Sbjct 1270005 CCACCACGAAGACGGAGAACCAAATGGAGTGTTGATTCCTTTTGAATGTTGTAGTCGGAC 1269946 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | || || || || |||||||||| || || || || || Sbjct 1269945 AATGTACGACCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGTGGA 1269886 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| |||||| ||||| | || | ||| || | | |||| Sbjct 1269885 ATTCCTTCCTTGTCTTGGATTTTGGCCTTGACATTTTCGATAGTGTCTGACGGTTCGACT 1269826 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| || | || ||||| || || ||||| ||||||||||||||| Sbjct 1269825 TCGAGAGTGATAGTCTTACCCGTGAGGGTTTTAACGAAAATCTGCATG 1269778 >seq17930 Length=2109152 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || ||||||| || || |||||||| || ||||||||| | Sbjct 1835534 CCACCACGAAGACGCAATACCAAATGTAATGTTGATTCCTTTTGGATATTGTAATCGGAC 1835475 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | || || || || | || ||||| || ||||| || || Sbjct 1835474 AATGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGGTCTGGTGGA 1835415 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||||| | || | || |||| | ||||| Sbjct 1835414 ATGCCTTCTTTGTCTTGGATTTTAGCCTTGACATTTTCGATTGTGTCGGATGGCTCGACT 1835355 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || |||||||||||||| |||||||| ||||| Sbjct 1835354 TCAAGTGTGATAGTCTTGCCGGTTAGAGTTTTAACGAAAATTTGCAT 1835308 >seq193 Length=1219868 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || ||||| | || || || ||||||||||| || |||||| Sbjct 521687 CCACCACGAAGACGCAATACCAAATGCAAAGTTGATTCTTTTTGAATGTTATAGTCGCTC 521746 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | || || || || | || |||||||| ||||| || || Sbjct 521747 AAAGTACGACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGCTGTTGGTCTGGTGGA 521806 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||||||||| ||| || ||||| | || | || || | | |||| Sbjct 521807 ATTCCTTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCTGATGGTTCGACC 521866 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | |||||| ||||| | ||||| || ||||| |||||| Sbjct 521867 TCCAAAGTGATGGTTTTTCCGGTCAATGTTTTCACAAAAATTTGCATG 521914 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || ||||| | || || |||||||| || || || |||||| Sbjct 520061 CCGCCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTATAGTCGCTC 520120 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | |||||||| || | || |||||||| || || || || Sbjct 520121 AATGTACGGCCATCTTCCAATTGCTTGCCGGCAAAAATCAAACGCTGTTGATCTGGCGGA 520180 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||||| | || | || || | | || | Sbjct 520181 ATACCTTCTTTGTCTTGGATTTTAGCCTTGACGTTTTCGATGGTGTCTGATGGTTCAACC 520240 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| ||||| | ||||| |||||||| ||||| Sbjct 520241 TCCAAAGTGATGGTTTTTCCGGTCAATGTTTTGACGAAAATTTGCAT 520287 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | || || || ||||||||||| || |||||| Sbjct 521459 CCACCACGAAGACGGAGAACCAAATGCAATGTTGATTCTTTTTGAATGTTATAGTCGCTC 521518 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| |||| ||| || || ||| | || |||||||| || || || || Sbjct 521519 AAAGTACGACCGTCTTCTAACTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGA 521578 Query 131128 ATTCCTTCTTTGTC 131141 || ||||||||||| Sbjct 521579 ATACCTTCTTTGTC 521592 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || ||||| | || || ||||| ||||||||||| |||||| Sbjct 521231 CCACCACGAAGACGCAAGACCAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCGCTC 521290 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || | || || || ||| | || |||||||| || || || || Sbjct 521291 AATGTACGACCGTCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGTTGATCTGGTGGA 521350 Query 131128 ATTCCTTCTTTGTC 131141 || ||||||||||| Sbjct 521351 ATACCTTCTTTGTC 521364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471868393584000